PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.2404G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 360aa MW: 40369.9 Da PI: 4.9299 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.1 | 8.9e-36 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++ed+++++++sws+ nsfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ik Araip.2404G 46 FLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLAGQKHLLRTIK 133 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ Araip.2404G 134 RRRN 137 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-61 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.5E-38 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-31 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAGRMRVKEE EETVVLCGSG PGGSSSSSSV SPQPMEGLHD VGPPPFLTKT FEVVEDPSTD 60 SIVSWSRARN SFVVWDSHRF STTILPRYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FLAGQKHLLR TIKRRRNVTQ SSTNMIQHGE GGGGGSCVEL GEFGLEGEIE RLRRDRTVLM 180 AEIVKLRQQQ HNSRERICSM ESRLQVTEKK QTQMMTFLAK ALHNQSFIHN LSLQNRELQG 240 FEMSRKRRIT ATASVENLQL DPVAVGEEQE ELETLLSSAC DNESSSEMKE TTTTAAAATS 300 ENIWEDLLSE DLVGGNPEDE VVIGDYPHQN LEDLAATNTG DWSEDLQKLV DHMGFLASNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-26 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.2404G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010360 | 2e-57 | AP010360.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB25H22, BM1932a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016163837.1 | 0.0 | heat stress transcription factor A-2 isoform X1 | ||||
Refseq | XP_025666202.1 | 0.0 | heat stress transcription factor A-2 isoform X1 | ||||
Swissprot | P41152 | 1e-120 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A445BU91 | 1e-166 | A0A445BU91_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G05500.5 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 3e-95 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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