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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.21Y0I | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 317aa MW: 37205.2 Da PI: 10.3301 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 25.3 | 4.9e-08 | 6 | 63 | 32 | 91 |
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
+ +Cs+egk + + + + +t++ ++C a++ v+ k g w ++k++l+H+H+++p
Araip.21Y0I 6 NITCSREGKWKFKISP---TLKTNPLAGINCPARIYVHILKdVGLWIISKVVLNHSHPCCP 63
568******9998776...999****************98879***************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.1E-5 | 5 | 63 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 317 aa Download sequence Send to blast |
MKLRINITCS REGKWKFKIS PTLKTNPLAG INCPARIYVH ILKDVGLWII SKVVLNHSHP 60 CCPDRIEMLK QHSELSMFVH RTIENNEEAR IRPSKTYQSF VAVMGGHHGL KLFEDRHLWI 120 LVYHHFITCN SSLTQFVKQY DNCLGSREQK EREFDIADFY TVISCAIKSS INAQFQHVNG 180 ITRSTQSTLE QVSNSRFNKF VVTYDAISYK SRDILCRHSL SALSFERVDK VAPKYIFKNV 240 KRRHTNIKSS QDEPLLEPRS KRFDDLVFRL HNICEFASKS KEFTGILHHA FDNKWLRCKN 300 TKRKVKVNIR YLMKMLR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.21Y0I |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015960283.1 | 1e-102 | protein FAR1-RELATED SEQUENCE 6-like | ||||
| TrEMBL | A0A445DRQ0 | 1e-135 | A0A445DRQ0_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF21 | 14 | 477 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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