PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.20WN4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 373aa    MW: 41764.6 Da    PI: 5.9884
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.20WN4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.5e-072366340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +  C+ +++ +  l+C+ ++  lC +C  e H+       Ht++
  Araip.20WN4 23 PSPCDYCNSSRSVLYCRADSAKLCFKCDREVHSTnqlfskHTRT 66
                 568*****************************668888888876 PP
2zf-B_box20.78.6e-0768107539
     zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                   C+ + + ++++ C + ++ lC++C  e+H +      H++
  Araip.20WN4  68 LCDSCYDSPASILCSTESSVLCHNCDWESH-NlslptvHER 107
                  7*****************************.5577777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0252168IPR000315B-box-type zinc finger
SMARTSM003362.2E-112168IPR000315B-box-type zinc finger
CDDcd000216.43E-62568No hitNo description
PROSITE profilePS501199.92664110IPR000315B-box-type zinc finger
CDDcd000210.009816897No hitNo description
SMARTSM003360.5169110IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTGPHQNSTH SASHTQQDKA SAPSPCDYCN SSRSVLYCRA DSAKLCFKCD REVHSTNQLF  60
SKHTRTLLCD SCYDSPASIL CSTESSVLCH NCDWESHNLS LPTVHERGPL EGFTACPSVS  120
ELLTILGFED VGKKALLYGG DGGGGDGGGG EKNSADDFMG CEIEGFSDFF VWDAPSVNRK  180
SSCGRHREEI LSQLRELAKS EPLDLDTEQQ QYLQSGNMST DLEHDFKTDK FPSYEWHRRS  240
SEPMNQVVPL NTLLNEEVAV EHPTSAVSEN NEGKTPISFK SETVSVVPKA TPCELTSQER  300
DSALLRYKQK KKTRRCRYIQ WKYKKEEAEG KGYIIQQRMK ISEHFCQLQH SCLLGLEAEG  360
LENNAYMLHI VKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314QKKKTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.20WN4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205133.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_025662403.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A444YIB20.0A0A444YIB2_ARAHY; Uncharacterized protein
STRINGGLYMA19G39460.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-57B-box type zinc finger protein with CCT domain