PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1V5ZI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 345aa    MW: 37877.2 Da    PI: 8.0633
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1V5ZIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.6e-4057116261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ 
  Araip.1V5ZI  57 PDKIIQCPRCKSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKHL 116
                  7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2854114IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3259115IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.08161115IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLFGRKIPLP ESQIPAISRH IMNPEQEMSS SDSRDDKKGS QHNDEATNEE DKTMKKPDKI  60
IQCPRCKSMD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKHKHLASQF  120
RSVLVAAAAA AATRVPEFTN SSSKNNNSDN ASGTVLEFGQ ERGIVNENSS IIYCTESEEE  180
SLSLCTNNNN ESSSENNNNA SKLLQCYPVP PWVMPWNNVV PQHGPNSIQW CPTPMVAAAT  240
IPVHLVPGPY WGGTPMWVAP GPAPGNVSIG SNHSRSSPSS STSNNNSCYS GNGNSPILGK  300
HSRDHSTVFI DEQKSSKCFL VPKIPRIDEP NNSEASVSPI WATLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1V5ZI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5823993e-31KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207722.10.0cyclic dof factor 3-like
RefseqXP_025658281.10.0cyclic dof factor 3-like
TrEMBLA0A445CS630.0A0A445CS63_ARAHY; Uncharacterized protein
STRINGGLYMA19G29610.21e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2964722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.18e-38cycling DOF factor 3