PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1K1BT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 321aa    MW: 35031.1 Da    PI: 7.984
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1K1BTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.7e-16233270136
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                  C++Cg ++  Tp++Rrgp+g+++LCnaCGl++  +g++
  Araip.1K1BT 233 CTHCGISSkaTPMMRRGPSGPRSLCNACGLFWSNRGTM 270
                  *****9999*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062034.9E-16165207IPR010402CCT domain
PROSITE profilePS5101712.65165207IPR010402CCT domain
SMARTSM004011.5E-14227280IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.264227278IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-12230287No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15231274IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.36E-15232278No hitNo description
PROSITE patternPS003440233260IPR000679Zinc finger, GATA-type
PfamPF003201.7E-13233270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYGSMNVPNQ ISAAEDNGAA ASDSVDNHHH NHYNSHGLED GAGGVVEDAD TVYVSGGGGP  60
DMSIIPSHAL SMSLIPLHPK RHAFYFFNVN PPPPNFSSLF SGAVIFQNFV SRIIPLKELL  120
DFAFGSSGVI VVGRVRNAFV GFAMCRVIAS ESEVEFPGRC SQPHRAASLN RFRQKRKERC  180
FDKKVRYSVR QEVALRMQRN KGQFTSSKKQ DGANSCGSDQ ESMQDAVQSE TSCTHCGISS  240
KATPMMRRGP SGPRSLCNAC GLFWSNRGTM RDLSKRNQEH TLALPEPVNE GNNTDCRTAV  300
PENINVAAFS ENDNASLATD R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1K1BT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163727.11e-158GATA transcription factor 25
RefseqXP_025613243.11e-158GATA transcription factor 25
RefseqXP_025666691.11e-158GATA transcription factor 25
SwissprotQ9LRH61e-68GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445BTU31e-156A0A445BTU3_ARAHY; Uncharacterized protein
STRINGXP_007141281.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-71GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]