PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.15T8K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 422aa MW: 48173.6 Da PI: 9.1975 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 1.9e-15 | 8 | 96 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k + +++ +s++l++p +f++++g + s t+ ++g W+v+l +k ++++++ +GW eFv+ + +g +vF+++g+s+f v++f+ Araip.15T8K 8 KLVL-PSTIQSRQLRIPDTFLNRYGAD--LSSIATFSVPDGSIWRVRL--KKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTF--IVRIFN 96 4444.55566667***********977..7779***************..********************************998888..999985 PP | |||||||
2 | B3 | 55.8 | 8.6e-18 | 289 | 379 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae+h +++ + ++l+ ++gr+W v++ yr+++ l++GW eF+ +n+L egD++vF+l +e l v++fr Araip.15T8K 289 VLRPSYLYRGCIMYLPSCFAEKHlNEV--S-GFIKLQLSDGRQWPVRCLYRGGR--AKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFR 379 78899******************5333..3.369999999********665555..66***********************875566666777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-16 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-13 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-13 | 9 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 278 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-24 | 280 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-22 | 284 | 379 | No hit | No description |
SMART | SM01019 | 6.6E-16 | 286 | 381 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.128 | 286 | 381 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 289 | 379 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MPRPSFHKLV LPSTIQSRQL RIPDTFLNRY GADLSSIATF SVPDGSIWRV RLKKLDNGFW 60 FVDGWAEFVQ RYSIGVGYLI VFRYEGKSTF IVRIFNLATS EISYQSPVRS SNEGAYFANR 120 LKIFEELEDE DSAEYSSPSG LTPGALQNKF TPEKNYTPPP LQNLFNGSKL NSVNWGDSAN 180 TLSSRSANSL DSQLTRDIGV QFNAIEFKRS TDELKLRTSV DEKEKKAPRK KRKSDGQEPS 240 EHQEEEAEMR FRFYESASAR KRTVTAEERE RAVNAAKAFE PLNPFCRVVL RPSYLYRGCI 300 MYLPSCFAEK HLNEVSGFIK LQLSDGRQWP VRCLYRGGRA KLSQGWFEFA IENNLGEGDV 360 CVFELLPMKE VILQVTLFRV TEDDGFFLPP PLPQPSQNLV SQSKMLNAHM HQRLGSGKLI 420 RN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-69 | 252 | 382 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-69 | 252 | 382 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.15T8K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187086.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_025642218.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 1e-125 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A445A8W1 | 0.0 | A0A445A8W1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007131905.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-70 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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