PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0MT43

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 299aa MW: 33100.4 Da PI: 7.9325

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0MT43	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Araip.0MT43 149 FSCNYCRRKFFSSQALGGHQNAH 171 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.04E-6	147	177	No hit	No description
PROSITE profile	PS50157	11.302	149	176	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLKGACYCYP FVFLVLSDSL FQLQSWYLVA YHSTNLHRIL FFFFRVQYYI ITMMTPNLNL 60 EPENYSEGSS QVASSVSLQE TSPELNKEST TASSCLTNLT KAEGDPGSVT LDLTLNFNAS 120 DGELKGTSDA SSEVGPEAFA SGSATPRVFS CNYCRRKFFS SQALGGHQNA HKRERTMAKR 180 AMRMGMFTER YTSLASLPLH GSPFRSLGIE AHSAMHQRPT PQLRAPDLRA GAKFERNHFG 240 SPIFMEDEDV GLFWPGSFRQ VGQQAGVNMV HAQTSNTNYS PMAPAQPKAS TSPDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0MT43

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191198.1	0.0	zinc finger protein 4
Refseq	XP_025639964.1	0.0	zinc finger protein 4
Refseq	XP_025639965.1	0.0	zinc finger protein 4
Refseq	XP_025639966.1	0.0	zinc finger protein 4
Refseq	XP_025639967.1	0.0	zinc finger protein 4
Swissprot	Q39263	3e-39	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A445DLQ2	0.0	A0A445DLQ2_ARAHY; Uncharacterized protein
STRING	XP_007158792.1	1e-131	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-41	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]