PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0L5SE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 327aa    MW: 35721.8 Da    PI: 6.9581
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0L5SEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46e-08447441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 + C+ +++  ++ +C+ +  +lC  C ++ H        H +v+
  Araip.0L5SE  4 KLCDSCKSASATVYCRPDAAFLCSPCDSKVHAAnklasrHPRVS 47
                 68*****************************6567777787776 PP
2zf-B_box23.61.1e-074791442
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   C+ +e+ +++  C+ +   lC  C   +H+       H+++p+
  Araip.0L5SE 47 SLCEVCEQAPAHVTCKADAASLCLACDRDIHSAnplasrHERIPV 91
                 68*****************************66899999998885 PP
3CCT706.2e-24270313144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Araip.0L5SE 270 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 313
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.651148IPR000315B-box-type zinc finger
SMARTSM003363.2E-13148IPR000315B-box-type zinc finger
PfamPF006433.1E-6447IPR000315B-box-type zinc finger
CDDcd000214.03E-8548No hitNo description
PROSITE profilePS5011910.4524491IPR000315B-box-type zinc finger
PfamPF006433.5E-64791IPR000315B-box-type zinc finger
CDDcd000211.28E-74891No hitNo description
SMARTSM003363.0E-94991IPR000315B-box-type zinc finger
PfamPF062034.8E-18270312IPR010402CCT domain
PROSITE profilePS5101716.787270312IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MASKLCDSCK SASATVYCRP DAAFLCSPCD SKVHAANKLA SRHPRVSLCE VCEQAPAHVT  60
CKADAASLCL ACDRDIHSAN PLASRHERIP VTPFYHSLAA TVKSPVNFLD DHRFFSDADA  120
DADVDVSTEE AEAASWLLPT PSNPSKADLN SSQYMFQEME QVPYVDLDYG NVDPKSEPKS  180
SATTDGVVPV QSKTANEHYF EPFAYGGYKY NSQSQSQSQM SHSVSSSSMD VGVVPDGNAM  240
SEISNCKVAS SVEGGNQAVT VTAQFSAADR EARVLRYREK RKNRKFEKTI RYASRKAYAE  300
TRPRIKGRFA KRTEVDPLNG YGVVPSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0L5SE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180957.10.0zinc finger protein CONSTANS-LIKE 4
RefseqXP_025681142.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-113COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A444X6550.0A0A444X655_ARAHY; Uncharacterized protein
STRINGXP_007136923.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-108CONSTANS-like 4