PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.0CI34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SRS | ||||||||
Protein Properties | Length: 164aa MW: 17450 Da PI: 5.4627 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 24.4 | 8.2e-08 | 67 | 85 | 7 | 25 |
DUF702 7 sCqdCGnqakkdCaheRCR 25 CqdCGn+akkdC+++RC Araip.0CI34 67 VCQDCGNRAKKDCSYKRCH 85 7*****************5 PP | |||||||
2 | DUF702 | 45.6 | 2.5e-14 | 83 | 120 | 116 | 153 |
DUF702 116 rcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 rc rvs++++ge+e++Y ++v+i GhvfkG+LydqG++ Araip.0CI34 83 RCHRVSAISNGEDEITYLATVHICGHVFKGFLYDQGAD 120 8***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.6E-5 | 67 | 85 | IPR007818 | Protein of unknown function DUF702 |
Pfam | PF05142 | 8.2E-13 | 83 | 120 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.8E-17 | 83 | 118 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MPQDNNNNVH HDQQHLLVGT NTTTTTNNSY WNLKMCPEVS EHDGGGGDGN NNGDGGGGSI 60 YGPEFRVCQD CGNRAKKDCS YKRCHRVSAI SNGEDEITYL ATVHICGHVF KGFLYDQGAD 120 GKNDEVPCVS VLQLGNSGKN NNNGECSSPT PIGVPISAYP ASAC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.0CI34 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172036.1 | 9e-43 | protein LATERAL ROOT PRIMORDIUM 1 isoform X1 | ||||
TrEMBL | A0A444XZC7 | 2e-41 | A0A444XZC7_ARAHY; Uncharacterized protein | ||||
STRING | AET02321 | 2e-30 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 5e-15 | Lateral root primordium (LRP) protein-related |