PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.066L2

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TALE

Protein Properties

Length: 554aa MW: 60271.3 Da PI: 8.1987

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.066L2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	403	440	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Araip.066L2 403 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 440 664559******************************88 PP
2	BELL	96.9	1.7e-31	277	334	15	72
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 l Vd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkdai+ q+ Araip.066L2 277 LTRHVDRRYNHYCEQMQMVVNSFDVVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQL 334 5678***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-43	227	332	IPR006563	POX domain
Pfam	PF07526	2.3E-6	232	259	IPR006563	POX domain
Pfam	PF07526	1.2E-26	277	331	IPR006563	POX domain
PROSITE profile	PS50071	12.568	381	444	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	384	448	IPR001356	Homeobox domain
CDD	cd00086	3.75E-13	384	445	No hit	No description
SuperFamily	SSF46689	3.25E-17	385	450	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	387	448	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	401	440	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MLSEMFNFPA TELLEQQHHH FRSPSSSRPQ PPENWYGSRQ GMIATTTTGF GGDSKQQISS 60 INADSAAAMH LFLMNPAQRR SPSPPPSATS STLHMLLPNH SSNSLQGFPP AGSAGGSFGQ 120 FTWVPDSGAG HEGAANNPAA APPGHHEINV VEGQGLSLSL SSSLQHLEAA KAEELRMGEG 180 GFLFYNQGGG AAASNSGHFP YKNHLQGGMV GQGHLAGFAS ASSSSSLGVV HVLRNSKYVK 240 AAQELLEEFC SVGRGHFKKN KFRLSIREGR SNFYQCLTRH VDRRYNHYCE QMQMVVNSFD 300 VVMGYGAAVP YTALAQKAMS RHFRCLKDAI TTQLKHSCEV LGEKEGAGGS GLTKGETPRL 360 KMLEQSLRQQ RAFQQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA 420 RQTGLSRNQV SNWFINARVR LWKPMVEEIN GGQQQAQNPS TTSGGESEIQ VEGFSENQEG 480 GSNSIMVAQG GMASEMMPPQ QSQRSMASDD TCRHGSYVAG AEYGTAFGTT AGDVSLTLGL 540 RHAGNVPRQN PFFS

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MLSEMFNFPA TELLEQQHHH FRSPSSSRPQ PPENWYGSRQ GMIATTTTGF GGDSKQQISS  60
INADSAAAMH LFLMNPAQRR SPSPPPSATS STLHMLLPNH SSNSLQGFPP AGSAGGSFGQ  120
FTWVPDSGAG HEGAANNPAA APPGHHEINV VEGQGLSLSL SSSLQHLEAA KAEELRMGEG  180
GFLFYNQGGG AAASNSGHFP YKNHLQGGMV GQGHLAGFAS ASSSSSLGVV HVLRNSKYVK  240
AAQELLEEFC SVGRGHFKKN KFRLSIREGR SNFYQCLTRH VDRRYNHYCE QMQMVVNSFD  300
VVMGYGAAVP YTALAQKAMS RHFRCLKDAI TTQLKHSCEV LGEKEGAGGS GLTKGETPRL  360
KMLEQSLRQQ RAFQQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA  420
RQTGLSRNQV SNWFINARVR LWKPMVEEIN GGQQQAQNPS TTSGGESEIQ VEGFSENQEG  480
GSNSIMVAQG GMASEMMPPQ QSQRSMASDD TCRHGSYVAG AEYGTAFGTT AGDVSLTLGL  540
RHAGNVPRQN PFFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-17	390	450	5	65	Homeobox protein Meis2
3k2a_B	5e-17	390	450	5	65	Homeobox protein Meis2
4xrs_A	4e-17	390	447	1	58	Homeobox protein Meis1
4xrs_B	4e-17	390	447	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.066L2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016199137.2	0.0	BEL1-like homeodomain protein 2
Refseq	XP_020978640.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_020978641.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_020978642.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_020978643.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q94KL5	1e-128	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A444WSL3	0.0	A0A444WSL3_ARAHY; Uncharacterized protein
STRING	POPTR_0007s12170.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-127	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]