PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.04SWW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 470aa MW: 51204.7 Da PI: 5.5646 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.7 | 1.5e-34 | 246 | 300 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+av+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Araip.04SWW 246 KPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 300 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.714 | 243 | 303 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-18 | 244 | 300 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-32 | 245 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-25 | 246 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.7E-10 | 248 | 299 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.9E-26 | 331 | 378 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MKAHPAKQLN NMGMSGALPS SLASLPPSLE DTYSKLSDSQ PAFVENELTT RPFTHSSSSG 60 VVGPMFSSSP GYSTDLHHSS LSPHDKQSKN THFLSPTFGN IASLPLPYSS NNGPIPSTTP 120 THYSKGNSAS WHADSLNSFL DLPTSTPIDS SQVESSACNI MASEDYSKQN NWQEWADQLI 180 SDDDTLTSNW NDILVDNIQD LEPKVVFQVP KSSSQFPAAH QQLPASSGEN HVGATPSSSA 240 NSAPAKPRMR WTPELHEAFV DAVNQLGGSE RATPKGVLKL MKVEGLTIYH VKSHLQKYRT 300 ARYRPESSEG SSEKKLGTIE EMPSLDLKTG IEITEALRMQ MEVQKRLHEQ LEIQRNLQLR 360 IEEQGRYLQM MFEKQCKSGG IEPFKASSSA IDSTSGVSSD AMKDSPAKSE MEAIPVDLCS 420 SGPHQANGNA TAEKKSLEVS GKQDAPEDPK QLASESEDSG HPPKRPRTDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-32 | 245 | 304 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.04SWW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207364.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_020959933.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_025663297.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_025663298.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
TrEMBL | A0A444YM22 | 0.0 | A0A444YM22_ARAHY; Uncharacterized protein | ||||
STRING | AES81572 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 3e-88 | phosphate starvation response 1 |