PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.0279H | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 551aa MW: 60727.1 Da PI: 5.8206 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.6e-18 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l Araip.0279H 37 KGPWTTSEDAMLVDYVNKHGEGNWNAVQKYSGLLRCGKSCRLRWANHL 84 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Araip.0279H 90 KGAFTAEEERLIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 133 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.397 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-11 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.067 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 92 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.20E-12 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 551 aa Download sequence Send to blast |
MRRLNNQNED EVLANDQTGL QLNDESKGGH AGVVLKKGPW TTSEDAMLVD YVNKHGEGNW 60 NAVQKYSGLL RCGKSCRLRW ANHLRPNLKK GAFTAEEERL IAELHAKMGN KWARMAAHLP 120 GRTDNEIKNY WNTRIKRRQR AGLPLYPPEL CVQAVQENQH GRSSGGIDGG NNMHHDFVHK 180 NYEIHSAIFD SWNGSQGILP YPPELPDISA YTGMLKGFDS SKYCKFEQIT SPNHKRLRES 240 TTPFIGSGGM NTNWFYPFDQ IQDNTPDKIA QSFGMQSPFD LGPSPHSSIC YSHSLSNGNS 300 STSKPAYEAV KFELPSLQYP ETDVGSWSTS PPPPLLESVD DFIQSPLPVS ALESDCSSPQ 360 NSGLLDALLY QARTLSNSKN HYSDKSSNSS TATPCDRALS STLNKYETDW EDYTDTISPF 420 GATSILNECT VASASANSLD EHPTVRSFND NIVKTENVDQ VWSPNSENQG MSAIKITRPD 480 VLLASDWLQQ GSGHDMRQGS MADDIPALRE DDLATDSKHT SSGTSLLSQV CGFGSCGRSV 540 MPAFCQGSDR G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 35 | 138 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.0279H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171706.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_020965431.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_025672343.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
TrEMBL | A0A444XZG3 | 0.0 | A0A444XZG3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007133583.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-121 | myb domain protein 33 |