PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.01FK9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 440aa MW: 48540.4 Da PI: 8.577

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.01FK9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	129	188	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Araip.01FK9 129 PEKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHL 188 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	120	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-32	131	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.435	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
KNFTLCKFAS QKHHHSSNIK QNYKRLMSGA GNMSDNKDPG IMLFGMKIPL PEFQIPASSQ 60 MGCQIQANFA AMSSCSSLKK KEVETQSAQN SEQEKNTCGS SYSKQESKNT EEGNEESSNT 120 DQERSFKKPE KILQCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA 180 GRRKNKHLAS QFQHIIVSEG TPAARLEPKE DSSGNNGSVL KFGPDVPLCE SMESMLSLRD 240 QKANVDAASS SNSYFQNESL ERKCYPVPPW IFSWNPGWNN GGSPVPLTFP ATMRGVPTIS 300 PPNIPLQFVP GSFWNRAQVW PLQTAAVSIG SNGCLSPSSS TTSNSCCSGN GSPTLGKHTR 360 DGNVFMDDEK SEICVLVPKT LRIDGPNEAS RKHLYESENG VSKKVEQKGQ DKERVLGVSQ 420 ILEANPAAIS RVHAFQESTQ

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

KNFTLCKFAS QKHHHSSNIK QNYKRLMSGA GNMSDNKDPG IMLFGMKIPL PEFQIPASSQ  60
MGCQIQANFA AMSSCSSLKK KEVETQSAQN SEQEKNTCGS SYSKQESKNT EEGNEESSNT  120
DQERSFKKPE KILQCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA  180
GRRKNKHLAS QFQHIIVSEG TPAARLEPKE DSSGNNGSVL KFGPDVPLCE SMESMLSLRD  240
QKANVDAASS SNSYFQNESL ERKCYPVPPW IFSWNPGWNN GGSPVPLTFP ATMRGVPTIS  300
PPNIPLQFVP GSFWNRAQVW PLQTAAVSIG SNGCLSPSSS TTSNSCCSGN GSPTLGKHTR  360
DGNVFMDDEK SEICVLVPKT LRIDGPNEAS RKHLYESENG VSKKVEQKGQ DKERVLGVSQ  420
ILEANPAAIS RVHAFQESTQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.01FK9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179252.1	0.0	cyclic dof factor 3-like
Refseq	XP_025684220.1	0.0	cyclic dof factor 3
TrEMBL	A0A444X9S1	0.0	A0A444X9S1_ARAHY; Uncharacterized protein
STRING	GLYMA19G29610.2	1e-149	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-59	cycling DOF factor 2