PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9997_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 297aa MW: 32840.5 Da PI: 8.7812

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9997_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.8e-36	44	101	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + + lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ Neem_9997_f_2 44 QAEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR 101 56789***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-24	42	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGLSSKQVSS DGVGWSQTLL QAQTLELPKP ASMKRPSPQN QQQQAEPLKC PRCDSTNTKF 60 CYYNNYNKSQ PRHFCKTCKR HWTKGGTLRN VPVGGGRKNK RLKTSNKSTN AATSTATSTT 120 GNNINSRVNT PMAVQCQQPR ENLPFALDDQ KILTDVLYQA LILQPSSLLQ QNPSNLDIKD 180 MSNNNVSFIN SSLPLSQNQS LPHPYASTSS FDTTPSSIST SFRSSNVFNY AGESIEGPTN 240 IINSSMPITT SSTVTQPWQI PSTSSGMDMT SYWNWDEIDT FVSTDLNIPW DDPDVKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599985.1	1e-121	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2C9U4V3	1e-119	A0A2C9U4V3_MANES; Uncharacterized protein
STRING	cassava4.1_034118m	1e-120	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	9e-31	TARGET OF MONOPTEROS 6