PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9985_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 230aa MW: 24183.3 Da PI: 5.1864

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9985_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.8e-43	66	165	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+ Neem_9985_f_1 66 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAK 161 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++ Neem_9985_f_1 162 AQAD 165 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.228	65	166	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-43	66	163	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MENYEVAGAT TATAANSTIT NIAGATTATA ANSTITNSTA GSSSPPPSSS SPNSAPNPPP 60 PVVISPCAAC KILRRRCADK CVLAPYFPPT EPAKFTIAHR VFGASNIIKF LQELPESQRA 120 DAVSSMVYEA SARIRDPVYG CAGAICQLQK QVNELQAQLA KAQADLVNMQ CQQANLAALL 180 CMEMSKSPQP NSPESVDNFI ITSPGSPQQG NPSCFLDDNN LSGPLWPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	58	173	3	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	58	173	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488170.1	1e-110	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-72	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	4e-72	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A067G403	1e-108	A0A067G403_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NDL8	1e-108	A0A2H5NDL8_CITUN; Uncharacterized protein
STRING	XP_006488170.1	1e-109	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-61	LOB domain-containing protein 1