PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9905_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 263aa MW: 30185.6 Da PI: 5.5276 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q+++Le+ Fe ++++ e++++LA++lgL+ rq+ vWFqNrRa+ k Neem_9905_f_2 57 KKRRLTLQQVKALEKNFEVDNKLEPERKAKLAEELGLQPRQIAVWFQNRRARLK 110 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121 | 5.9e-39 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qvk+LE++Fe ++kLeperK++la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydalk + ++Le+e+e+L+++++e Neem_9905_f_2 56 EKKRRLTLQQVKALEKNFEVDNKLEPERKAKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALKLDYNTLEQENETLAAKIRE 148 69**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.01E-18 | 47 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-17 | 55 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.95E-15 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 59 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.0E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.0E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-14 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKRFSSSDSL DALFSVYQSK DKKSPKNNQI YSREFQAMID SLEEEDYREE GSQAPEKKRR 60 LTLQQVKALE KNFEVDNKLE PERKAKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL 120 LKANYDALKL DYNTLEQENE TLAAKIRELK AKLCKENVDS SHAVKEEAPV SEQSKNQDLC 180 DNANAPLLIS PASSSSLFTG SSSSSHSPIN WVQFSDSRRI PSGAYQQPHF LKVEEQSWFN 240 SEDSCNFLSV DQAPTLQWYF TGQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006472553.1 | 1e-140 | homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
TrEMBL | A0A067GZZ6 | 1e-138 | A0A067GZZ6_CITSI; Uncharacterized protein | ||||
STRING | XP_006472553.1 | 1e-139 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 2e-50 | homeobox protein 5 |