PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9891_f_9
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 410aa    MW: 46400.6 Da    PI: 9.303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9891_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-175298148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l  av+++G ++Wk Ia++++  Rt  qc +rwqk+l
    Neem_9891_f_9 52 KGGWTEEEDKILEFAVEKFGARNWKNIAECVP-DRTSVQCLHRWQKVL 98
                     688*****************************.************986 PP
2Myb_DNA-binding60.63.3e-19104150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+l++++v + G++ W+ Ia++++ gR +kqc++rw+++l
    Neem_9891_f_9 104 KGPWTKEEDDLIIELVGKQGNKKWSEIAKHLP-GRIGKQCRERWHNHL 150
                      79******************************.*************97 PP
3Myb_DNA-binding56.94.7e-18157198245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +WT+eE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
    Neem_9891_f_9 157 TAWTKEEELTLIKAHEIYGNK-WAEIAKLLP-GRTENSIKNHWN 198
                      68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3444798IPR017930Myb domain
SMARTSM007171.1E-1551100IPR001005SANT/Myb domain
PfamPF002493.6E-165298IPR001005SANT/Myb domain
SuperFamilySSF466894.17E-1753108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2354115IPR009057Homeodomain-like
CDDcd001675.66E-145598No hitNo description
PROSITE profilePS5129431.68899154IPR017930Myb domain
SuperFamilySSF466891.73E-31101197IPR009057Homeodomain-like
SMARTSM007176.8E-18103152IPR001005SANT/Myb domain
CDDcd001674.76E-15106150No hitNo description
PfamPF139214.2E-19107164No hitNo description
Gene3DG3DSA:1.10.10.606.8E-28116157IPR009057Homeodomain-like
SMARTSM007172.5E-17155203IPR001005SANT/Myb domain
PROSITE profilePS5129422.159155205IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-23158206IPR009057Homeodomain-like
CDDcd001674.25E-13158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVEATTCHND ENNEEGLVSL IPSVSDVSSH KAEAKRDYIQ GRMTGPTRRS TKGGWTEEED  60
KILEFAVEKF GARNWKNIAE CVPDRTSVQC LHRWQKVLDP SLVKGPWTKE EDDLIIELVG  120
KQGNKKWSEI AKHLPGRIGK QCRERWHNHL NPDIKKTAWT KEEELTLIKA HEIYGNKWAE  180
IAKLLPGRTE NSIKNHWNCS ISKKIIHSPY SDPYNFKTKA ESRNSEVLKQ NVDQKINLRR  240
ERNPETCSLD LVVGNASGRE IHLATTDKKD CRFVREASDT MEPPNKTVFD KKSCAACIPM  300
GGQGRESAGT AQAPRVLKLA CLNYEPLQMN DLNTPLTTSK FPRDICDASS SPITPPSHEE  360
GIPVSCRSPT AILRNAARTF KLPSIIRKRR HRTARHIGTG FHNDSSSRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67552059159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67552059159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021686835.11e-124transcription factor MYB3R-2-like
RefseqXP_021817082.11e-124uncharacterized protein LOC110759336
TrEMBLA0A0U3SSH21e-123A0A0U3SSH2_PRUPE; Myb family transcription factor 3R-1
TrEMBLM5XNR51e-122M5XNR5_PRUPE; Uncharacterized protein
STRINGXP_008232807.11e-124(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.17e-86Homeodomain-like protein