PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9889_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 168aa    MW: 18918.6 Da    PI: 9.0325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9889_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-201767255
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  Neem_9889_f_1 17 KYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYSMRG 67
                   8********.**********4...3234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-151767IPR001471AP2/ERF domain
CDDcd000181.54E-191776No hitNo description
PROSITE profilePS5103223.7881775IPR001471AP2/ERF domain
SMARTSM003809.3E-361781IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-231777IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-321777IPR001471AP2/ERF domain
PRINTSPR003671.7E-111829IPR001471AP2/ERF domain
PRINTSPR003671.7E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDEDPKGTRG KEGGEVKYRG VRRRPWGKFA AEIRDSNRHG QRVWLGTFNT AEEAARAYDR  60
AAYSMRGQLA ILNFPHEYPS AANEAAVRGS IKCFSLKYSW TLLSTEDRGG LTPICVAQLS  120
DNIHIILIKP CLGVLSVVYL NCDHRLGTCI AEISEKHFWK KQLCTAFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-36178175Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027938237.16e-39ethylene-responsive transcription factor ERF096-like
TrEMBLA0A4D6N2Y41e-37A0A4D6N2Y4_VIGUN; Ethylene-responsive transcription factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-28ERF family protein