PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9880_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 340aa MW: 38422.9 Da PI: 6.4537

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9880_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102	3.3e-32	115	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ltpsdv+k++rlv+pk++ae++ +g+ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++++ Neem_9880_f_1 115 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggdSGD--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDIILFERHRTDSD 208 99*************************955444..6779********************************************9888999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++++r+ Neem_9880_f_1 209 RLFISWRRR 217 9***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.3E-42	110	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-31	111	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.38E-30	113	207	No hit	No description
Pfam	PF02362	3.0E-29	115	217	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.41	115	218	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-26	115	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSINHFSTDL QEGPWWQQRQ QEMETTTQNA SSSSKQQQTI PPNQQQFWPS FHQHQQFYHQ 60 HQLWLGSYNS SHPTLSFNRN QEDNNTTTDQ HEVDDQTVTA SRELQETDLE KEPMFEKPLT 120 PSDVGKLNRL VIPKQHAEKY FPLGGDSGDK GLLLSFEDES GKCWRFRYSY WNSSQSYVLT 180 KGWSRYVKEK RLDAGDIILF ERHRTDSDRL FISWRRRGAA AQDGQNGGGG GGSGGVGGVG 240 WSRGLYSGHP YPVDVVQSHG VTVPYQPDCL HAGAVVQSQT TPVGSSKTLR LFGVNLECQL 300 DESEPSTPSD GSTMSSRGQA HQHYQLNYAQ RQNHMSVQEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-50	110	217	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-50	110	217	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275955.2	1e-116	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	6e-68	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1Q3BY06	1e-122	A0A1Q3BY06_CEPFO; B3 domain-containing protein
STRING	XP_006481711.1	1e-115	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	6e-59	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]