PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9750_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Nin-like | ||||||||
Protein Properties | Length: 230aa MW: 25814.3 Da PI: 6.1301 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83 | 2.9e-26 | 171 | 221 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s ++s+yF+++i++AAk+L+v+lTvLK++CR++GI+RWPhRk++sl Neem_9750_f_2 171 SKTLSKGTISQYFYMTITEAAKQLNVGLTVLKKRCRELGIQRWPHRKLTSL 221 6899999*****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.665 | 153 | 230 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-22 | 174 | 221 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MATHSPNSWS TDELFVKEEA NLFSSLIQLP SEEFSGNGFT SLDWQNGLFL PDSCFDATPL 60 MESYADDPYA SLGIVPSPGF IEGEREIHTV FLVSFLFGLL LKRVLCYFPN KGDISDNYVN 120 GAGLLNELNP VFESEKQAIV LCSTNGETSE QSREEKKVRA CRKDKNTNSS SKTLSKGTIS 180 QYFYMTITEA AKQLNVGLTV LKKRCRELGI QRWPHRKLTS LQTLIKNLHV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-22 | RWP-RK domain-containing protein |