PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9750_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Nin-like
Protein Properties Length: 230aa    MW: 25814.3 Da    PI: 6.1301
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9750_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK832.9e-26171221252
         RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    +k++s  ++s+yF+++i++AAk+L+v+lTvLK++CR++GI+RWPhRk++sl
  Neem_9750_f_2 171 SKTLSKGTISQYFYMTITEAAKQLNVGLTVLKKRCRELGIQRWPHRKLTSL 221
                    6899999*****************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.665153230IPR003035RWP-RK domain
PfamPF020424.5E-22174221IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MATHSPNSWS TDELFVKEEA NLFSSLIQLP SEEFSGNGFT SLDWQNGLFL PDSCFDATPL  60
MESYADDPYA SLGIVPSPGF IEGEREIHTV FLVSFLFGLL LKRVLCYFPN KGDISDNYVN  120
GAGLLNELNP VFESEKQAIV LCSTNGETSE QSREEKKVRA CRKDKNTNSS SKTLSKGTIS  180
QYFYMTITEA AKQLNVGLTV LKKRCRELGI QRWPHRKLTS LQTLIKNLHV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-22RWP-RK domain-containing protein