PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9748_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 683aa MW: 76389.2 Da PI: 6.9894 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q++ Le++F+ +++p++++r++L+++lgL+ +q+k+WFqN+R++ k Neem_9748_f_1 28 HRHTAYQIQSLETFFKDCPHPDENQRRQLSRELGLDPKQIKFWFQNKRTQTK 79 6789********************************************9987 PP | |||||||
2 | START | 90.7 | 3.1e-29 | 309 | 420 | 94 | 206 |
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvks 187 m ++ lsplvp R+++f+R+++q + g wvivdvS d +++ R+ +lpSg++i++++n s+vtwvehv++++++ h l+r l+ Neem_9748_f_1 309 MHEQMHILSPLVPpREYYFLRHCQQIEPGLWVIVDVSYDWLRENIA---PSRCWRLPSGCMIQEMPNSCSNVTWVEHVEVDDKTLtHRLYRDLICG 401 66788899***********************************973...5699*****************************9988********** PP HHHHHHHHHHHHTXXXXXX CS START 188 glaegaktwvatlqrqcek 206 + a ga +wv tlqr ce+ Neem_9748_f_1 402 SSAYGAERWVLTLQRMCER 420 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 7 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-18 | 10 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 21 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.86E-16 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 28 | 79 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 24.946 | 223 | 423 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-26 | 225 | 421 | No hit | No description |
CDD | cd08875 | 6.22E-83 | 227 | 419 | No hit | No description |
SMART | SM00234 | 4.9E-10 | 232 | 420 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.6E-4 | 309 | 384 | IPR023393 | START-like domain |
Pfam | PF01852 | 9.4E-24 | 310 | 420 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-14 | 441 | 656 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MDFVARNGSN SGDEQEHSNS RKGKKTFHRH TAYQIQSLET FFKDCPHPDE NQRRQLSREL 60 GLDPKQIKFW FQNKRTQTKA QNERADNSIL RAENERIQCE NLAIREALKN VICPACGGPP 120 FGEEERQRSL EKLQLENAQL KEEASTPSFH EKVSNLLAKY IGKPISQINP LMPVPISTPT 180 SGPVVDHPVP VPAVFPIQDM DLDLNSSGNS ENIPLTFQLK GISDVDKALM VESVNSAMDQ 240 LIRLLQINEP LWIKSSSDGR YTIHRDSYEK IFPRVSHFKT STSRLESSKC SGMVTMNAMQ 300 LVDVFLDSMH EQMHILSPLV PPREYYFLRH CQQIEPGLWV IVDVSYDWLR ENIAPSRCWR 360 LPSGCMIQEM PNSCSNVTWV EHVEVDDKTL THRLYRDLIC GSSAYGAERW VLTLQRMCER 420 LGFSIPENSR AHHKFAGVIN LPEGRKSMLK LAHRMVKNFC AVLSMSGKLD FPQLSEVNNS 480 GVRVSVRKSI EPGQPSGMIV SAATSLWLPL PSENVFNFFK NEKMRVQWDV LSNGNPVHEI 540 ARISTGAHPG NCISIIRPFI PTESNMVMLQ ESCIDILGSM MVYAPIDIPS MNLAISGEDS 600 STIAILPSGF VISGDGRQRD INGASTSTNT ASVGSLLTVA FQILVSSPAS SKDFNMESVA 660 TVNTLISSTV QRIKATLNCS NLD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421085.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A2H5PLL6 | 0.0 | A0A2H5PLL6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S673 | 0.0 | V4S673_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421085.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |