PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_969_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 609aa MW: 68238.4 Da PI: 8.3098

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_969_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.5e-34	369	423	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Neem_969_f_2 369 KPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 423 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.889	366	426	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-18	367	424	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-31	368	426	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-25	369	423	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-10	371	422	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-22	454	500	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MESSEKLATQ SQVALPTKYG RKQPKQHWAP LAHYSSHSSS PTSSFKPLTF LLKSPPLKFH 60 HQRILVIRLR PNGCDQGQMK PNTYSCKRGC DIVVEIKKTR TFKVLLSVNQ ELLCVRFGSS 120 TSGVYPIQSN HLLLRIQSRF ERASLERHSC EFKKKFLGKG SATMSSSFPV LPPSLDEKYS 180 KLPTSNPIAP QTSASSSRFP SNMHASSVST HQRYSQNSPF ISQSSRDGAR LPSSHFSPSE 240 VHHTPLINHP EENKDISWGI DPLQDFLDFP ENDPVQTGLM ENTGDIACHE WADQLISVDD 300 GPDLNWSEVL ADVNARDARS KTMYRMLKLS ADVQMQHPQV QSQVHQHQAV SNEEPHAVGN 360 PLSTVPPTKP RMRWTPELHE AFVEAVNKLG GSERATPKGV LKLMNVEGLT IYHVKSHLQK 420 YRTARHRPES SEGSSEKKSN LTEDMKSLDL KTTMSITEAL RLQMEVQKRL HEQLEIQRNL 480 QLQIEEQGRY LQKMFEQQRQ MENDKSKASS SSLGDPSAPL SESKQHASAN EISATPEANL 540 AKTGTDSCHA NSVLEESSRG LNQKQKAPET KTAEELDQDD DESSQKPTKR ARSNDTEDIS 600 PKSASNNTQ

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MESSEKLATQ SQVALPTKYG RKQPKQHWAP LAHYSSHSSS PTSSFKPLTF LLKSPPLKFH  60
HQRILVIRLR PNGCDQGQMK PNTYSCKRGC DIVVEIKKTR TFKVLLSVNQ ELLCVRFGSS  120
TSGVYPIQSN HLLLRIQSRF ERASLERHSC EFKKKFLGKG SATMSSSFPV LPPSLDEKYS  180
KLPTSNPIAP QTSASSSRFP SNMHASSVST HQRYSQNSPF ISQSSRDGAR LPSSHFSPSE  240
VHHTPLINHP EENKDISWGI DPLQDFLDFP ENDPVQTGLM ENTGDIACHE WADQLISVDD  300
GPDLNWSEVL ADVNARDARS KTMYRMLKLS ADVQMQHPQV QSQVHQHQAV SNEEPHAVGN  360
PLSTVPPTKP RMRWTPELHE AFVEAVNKLG GSERATPKGV LKLMNVEGLT IYHVKSHLQK  420
YRTARHRPES SEGSSEKKSN LTEDMKSLDL KTTMSITEAL RLQMEVQKRL HEQLEIQRNL  480
QLQIEEQGRY LQKMFEQQRQ MENDKSKASS SSLGDPSAPL SESKQHASAN EISATPEANL  540
AKTGTDSCHA NSVLEESSRG LNQKQKAPET KTAEELDQDD DESSQKPTKR ARSNDTEDIS  600
PKSASNNTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-29	369	427	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024952051.1	0.0	protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	2e-93	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	V4S0U9	0.0	V4S0U9_9ROSI; Uncharacterized protein
STRING	XP_006470918.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	4e-89	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]