PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9565_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 418aa    MW: 46253 Da    PI: 5.8084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9565_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1757106255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Neem_9565_f_3  57 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 106
                    59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-2157114IPR016177DNA-binding domain
SMARTSM003801.5E-3157120IPR001471AP2/ERF domain
CDDcd000187.05E-3057113No hitNo description
PfamPF008474.8E-1157106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2957113IPR001471AP2/ERF domain
PROSITE profilePS5103222.11557114IPR001471AP2/ERF domain
PRINTSPR003672.5E-95869IPR001471AP2/ERF domain
PRINTSPR003672.5E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEEALRRLNG MTHLTESDSR NSFKDNKKNG NTGTTTTTAN NKRSLKESGN TTGTTMRYRG  60
VRRRPWGRYA AEIRDPQSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPATEP  120
HPTPDHFLPP FNFSKQSQPS IGDLPTCQFN PSSHWPSFAN PHVADHHFSG LSASQRNSSL  180
NMLLLRDLLN SSANSSLYTP TQPLYDQFPF SSNSSSPTPS VFAGGSLLMN ASNNTSTKCV  240
GDDITTNMSD VFRGSSICVP VIEDQQGYNT TDACSKSTPQ VDDMEFFPKE PSDSGLLHEI  300
IQGFFPNPSS KKCDDSTKTT PNYSQESIIS PVPDMSVSQS MDGLKRGIKN EHFGFYFDFQ  360
GGPQQFEDFN EVTGSQAVLY GNELLPLNQQ VGPESISDDI FQYHPELMSA FAARVQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19571131471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735631.11e-145ethylene-responsive transcription factor ESR2-like
TrEMBLA0A061E8G41e-136A0A061E8G4_THECC; DORNROSCHEN-like, putative
STRINGEOY006421e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-14DORNROSCHEN-like