PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9411_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 277aa MW: 31717.8 Da PI: 6.1668 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.8 | 1.3e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ Neem_9411_f_1 10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPt 104 79*************************655.78***************88888999**************************************97 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++elvg++ktLvfy++rap+g kt W+mhe+rle Neem_9411_f_1 105 TRELVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 7888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.91 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLMEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPTTRELVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGE NSAKLSPQFI FDSTATANNN 180 ASILPMNSST ASPPTVTVPF GYQPVSSTPY HNHNSSNSML NLLQFSSLEK NSSDDQIPDD 240 ITSKNDVFFW DMELQANLGD GLEDMRFDQT ENSMVFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443820.1 | 1e-142 | NAC domain-containing protein 21/22 | ||||
Refseq | XP_006479521.1 | 1e-142 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 5e-65 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | V4TZ66 | 1e-141 | V4TZ66_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479521.1 | 1e-142 | (Citrus sinensis) | ||||
STRING | XP_006443820.1 | 1e-142 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-94 | NAC domain containing protein 74 |