PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_92_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 746aa MW: 84543.3 Da PI: 5.2565

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_92_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	385	8.5e-118	372	743	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d ++a +lL+++++++s +gd mqR+a++f+ +L+arla+ ++++y al +++ts +++l+a++lf ++P+ k+s++ Neem_92_f_1 372 LRTLLTLCAQAVAANDRRNAYELLKQIRQHSSATGDGMQRMAQCFADGLEARLAGAGTQIYTALITKHTS---AADVLKAYHLFLAACPFRKLSNFFS 466 5789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +++++r+HiiDf+i++G+QWp+L+q L++R +gpp+l+iTg++ p++g +e++eetg+rLak+Ae+++vpfefn+ +a++++++++e+L Neem_92_f_1 467 NKTIMNLADKATRLHIIDFGIMYGFQWPCLIQRLSTRLGGPPKLQITGIDLPQPGfrPAERVEETGRRLAKYAETFKVPFEFNA-IAQKWDTIQIEDL 563 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++gE+l+Vn+ ++ +llde+v ++ +r+ vL+l+++++P+v+++ + h+++ F +rf eal +ys++fd+l++++p e er+ +Ere++gr Neem_92_f_1 564 KIESGEVLIVNCLFRFRYLLDETVVVDCPRNIVLNLIRKMNPDVFIMGIVNGAHSAPFFTTRFREALFFYSTMFDMLDTNVPCEIPERMLIEREIFGR 661 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer+er et+++W+ r ++aGF+++pl+e+++k ak +++ + + + ++e+s++l++gWk+r ++++S+W+ Neem_92_f_1 662 EAMNVIACEGAERIERPETYKQWQFRNTRAGFTQLPLNEEIMKMAKERVHTSYHKDFVIDEDSQWLLQGWKGRIVYALSSWK 743 *************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.536	346	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-115	372	743	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MVMDQSLRDR YKLNDEISSI LLDQNLINRF KTNNTLVNQN CVDIQLVPPD PIPDNQNLSS 60 VVRQEVDSLE DYDFSDVVLK YINEMLMEED MEEKTCMFQE SSAALQAAEK SLYELLGENY 120 PPQPNYDPKA SVDQSHETPD ENHDLSCSYN HSSTFSTNSD NLVEHGWNFD SGECKSSNFA 180 SQSSSQSTSQ SSYSSNSNSN VVDGFVDSPV STLKIPEIFN DSESVMQFKR GFEEASKFLP 240 NGNTLFIDLE NNGVSVKELK EEPKNLVVKM GKKPEKEYSP NGSRGRKNRH PEDADSESGR 300 SNKQLTVYTE SAVSEEMFDM VLLNCGQSES VLREALQNGT SKNVQQNKQS KGSNGGKTRG 360 RKQGGKKDVV DLRTLLTLCA QAVAANDRRN AYELLKQIRQ HSSATGDGMQ RMAQCFADGL 420 EARLAGAGTQ IYTALITKHT SAADVLKAYH LFLAACPFRK LSNFFSNKTI MNLADKATRL 480 HIIDFGIMYG FQWPCLIQRL STRLGGPPKL QITGIDLPQP GFRPAERVEE TGRRLAKYAE 540 TFKVPFEFNA IAQKWDTIQI EDLKIESGEV LIVNCLFRFR YLLDETVVVD CPRNIVLNLI 600 RKMNPDVFIM GIVNGAHSAP FFTTRFREAL FFYSTMFDML DTNVPCEIPE RMLIEREIFG 660 REAMNVIACE GAERIERPET YKQWQFRNTR AGFTQLPLNE EIMKMAKERV HTSYHKDFVI 720 DEDSQWLLQG WKGRIVYALS SWKPSC

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MVMDQSLRDR YKLNDEISSI LLDQNLINRF KTNNTLVNQN CVDIQLVPPD PIPDNQNLSS  60
VVRQEVDSLE DYDFSDVVLK YINEMLMEED MEEKTCMFQE SSAALQAAEK SLYELLGENY  120
PPQPNYDPKA SVDQSHETPD ENHDLSCSYN HSSTFSTNSD NLVEHGWNFD SGECKSSNFA  180
SQSSSQSTSQ SSYSSNSNSN VVDGFVDSPV STLKIPEIFN DSESVMQFKR GFEEASKFLP  240
NGNTLFIDLE NNGVSVKELK EEPKNLVVKM GKKPEKEYSP NGSRGRKNRH PEDADSESGR  300
SNKQLTVYTE SAVSEEMFDM VLLNCGQSES VLREALQNGT SKNVQQNKQS KGSNGGKTRG  360
RKQGGKKDVV DLRTLLTLCA QAVAANDRRN AYELLKQIRQ HSSATGDGMQ RMAQCFADGL  420
EARLAGAGTQ IYTALITKHT SAADVLKAYH LFLAACPFRK LSNFFSNKTI MNLADKATRL  480
HIIDFGIMYG FQWPCLIQRL STRLGGPPKL QITGIDLPQP GFRPAERVEE TGRRLAKYAE  540
TFKVPFEFNA IAQKWDTIQI EDLKIESGEV LIVNCLFRFR YLLDETVVVD CPRNIVLNLI  600
RKMNPDVFIM GIVNGAHSAP FFTTRFREAL FFYSTMFDML DTNVPCEIPE RMLIEREIFG  660
REAMNVIACE GAERIERPET YKQWQFRNTR AGFTQLPLNE EIMKMAKERV HTSYHKDFVI  720
DEDSQWLLQG WKGRIVYALS SWKPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-46	379	744	26	380	Protein SCARECROW
5b3h_A	4e-46	379	744	25	379	Protein SCARECROW
5b3h_D	4e-46	379	744	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435553.1	0.0	scarecrow-like protein 30
Refseq	XP_024042229.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A067G0Q2	0.0	A0A067G0Q2_CITSI; Uncharacterized protein
STRING	XP_006435553.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]