PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9293_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 408aa    MW: 44832.8 Da    PI: 4.9213
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9293_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.12.4e-95723763319
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe+v+ ++l +a+ lL ++sel+sp g++ +R+ ayf  AL+ar+++s+ ++y+ l++++ + ++s++ ++al+ ++ ++P++kfsh+ta
  Neem_9293_f_3  72 GLLLQCAECVAMDNLDEATDLLPEISELSSPFGSSPERVGAYFSHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTA 167
                    58********************************************************************************************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++   +RiTg+gs    s+e le+tg+rLa fA++lg+pfef++l  k  +  +l++L
  Neem_9293_f_3 168 NQAIFQALDGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRAMRITGFGS----SSELLESTGKRLAAFATSLGLPFEFHPLQGKIGNVSDLSQL 259
                    ***************************************************....9**************************86666666699*** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                     v+p E+++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++vE++l+
  Neem_9293_f_3 260 GVRPSETIVVHWMH--HCLYDITGSDLG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLF 348
                    ************99..777777777777....9*********************.789************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerl 319
                    g ei+n+va  g +r+ + + +e+W e l
  Neem_9293_f_3 349 GCEIRNIVAVGGPKRTGEVK-VERWGEEL 376
                    **************998877.99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.85144408IPR005202Transcription factor GRAS
PfamPF035148.4E-9372376IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLQSLVPRSP INPSAMKGKR VDRDGEGDND DDPSRTSTKR ANVVELEQRN EEEEAEQEEV  60
MEGESRGLRL LGLLLQCAEC VAMDNLDEAT DLLPEISELS SPFGSSPERV GAYFSHALQA  120
RVVSSCLGTY SPLTTKSLTL SQSQKIFNAL QSYNSICPLI KFSHFTANQA IFQALDGEDC  180
VHVIDLDIMQ GLQWPGLFHI LASRSKKIRA MRITGFGSSS ELLESTGKRL AAFATSLGLP  240
FEFHPLQGKI GNVSDLSQLG VRPSETIVVH WMHHCLYDIT GSDLGTLRLL TLLRPKLITI  300
VEQDLSHGGS FLGRFVEALH YYSALFDALG DGLGADSIER HTVEQQLFGC EIRNIVAVGG  360
PKRTGEVKVE RWGEELKGGY TLVEENGSLK LGWKDLSLLT ASAWQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1467640624379Protein SCARECROW
5b3h_D1e-1467640624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429765.10.0scarecrow-like protein 23
RefseqXP_006481359.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-169SCL23_ARATH; Scarecrow-like protein 23
TrEMBLV4SVF60.0V4SVF6_9ROSI; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-160GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]