PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9274_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 502aa MW: 55170.6 Da PI: 8.1511

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9274_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	144	204	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Neem_9274_f_1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSTS 204 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	141	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MSEFKDSAIK LFGKTIPLSV VNYQQPQQQE ILSNEHQSSS ADDHGSFDRN PETSQREDNS 60 NKELQEQQDE EQKEHSGKQI IEYKQDDGSS KQITEELKDP TTSSGNTDHP KTPPIDGETS 120 SLKSSKNAEQ SETSTSQEKP LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KSTSVSHFRQ IMISEALRSG HTNVPNGIHN PSFGNNGTVL 240 TFGSDSPLCE SVASVLNLTD KTQNRMRNGF HGPEQRNLPS HGGRSNGDDH SSGSSITAAN 300 SSEKGGNSAS QDVRIKNYQG SAPRVPYFPG PPWPYPWNTA MPPPPAFYPP GFPVSFYPET 360 TYWGCAIPGP WNMPCVSPNS SSLSQCAPSS TPATPSLGKH SRDGNIISST KSEKEEPSRG 420 SNNSERSVLV PKTLRIDDPS EAAKSSIWAT LGIKNEKTNS GEGLFKGFQS KRDDRNYTAE 480 TSAVLQANPA ALSRSLNFRE KT

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MSEFKDSAIK LFGKTIPLSV VNYQQPQQQE ILSNEHQSSS ADDHGSFDRN PETSQREDNS  60
NKELQEQQDE EQKEHSGKQI IEYKQDDGSS KQITEELKDP TTSSGNTDHP KTPPIDGETS  120
SLKSSKNAEQ SETSTSQEKP LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KSTSVSHFRQ IMISEALRSG HTNVPNGIHN PSFGNNGTVL  240
TFGSDSPLCE SVASVLNLTD KTQNRMRNGF HGPEQRNLPS HGGRSNGDDH SSGSSITAAN  300
SSEKGGNSAS QDVRIKNYQG SAPRVPYFPG PPWPYPWNTA MPPPPAFYPP GFPVSFYPET  360
TYWGCAIPGP WNMPCVSPNS SSLSQCAPSS TPATPSLGKH SRDGNIISST KSEKEEPSRG  420
SNNSERSVLV PKTLRIDDPS EAAKSSIWAT LGIKNEKTNS GEGLFKGFQS KRDDRNYTAE  480
TSAVLQANPA ALSRSLNFRE KT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483138.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2H5N8X6	0.0	A0A2H5N8X6_CITUN; Uncharacterized protein
STRING	XP_006483138.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-83	cycling DOF factor 3