PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9263_f_8

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 153aa MW: 17903.2 Da PI: 7.7461

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9263_f_8	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	6e-47	7	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 G+rF+P++ee+++++L++k++g +++ ++i+evdi+k+ePw+Lp +++ +++ewyfF k kya++ r++r+tk+gyWk tg+d+++l++ + Neem_9263_f_8 7 LGYRFRPSEEEIIMYFLERKMHGLGFPV-HTINEVDICKFEPWELPaQSALLDDEEWYFFNKPTLKYANSARTERTTKAGYWKVTGQDRPILDNrG 101 59************************.78***********555556999*********************************9866 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkk Lvf++grap+g+kt+Wvmhey+ Neem_9263_f_8 102 KNVIGLKKNLVFHTGRAPNGVKTSWVMHEYHS 133 778*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.559	5	153	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-50	7	139	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MDDINYLGYR FRPSEEEIIM YFLERKMHGL GFPVHTINEV DICKFEPWEL PAQSALLDDE 60 EWYFFNKPTL KYANSARTER TTKAGYWKVT GQDRPILDNR GKNVIGLKKN LVFHTGRAPN 120 GVKTSWVMHE YHSNNASAYQ AFSNYFALPY SVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-37	8	132	18	139	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024043356.1	2e-73	NAC domain-containing protein 71-like
Swissprot	Q9FLR3	1e-39	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	V4TC69	1e-57	V4TC69_9ROSI; Uncharacterized protein
STRING	XP_006491410.1	9e-70	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18606	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	5e-42	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]