PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_9263_f_13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 282aa MW: 31438.1 Da PI: 9.3555 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 102.5 | 2.3e-32 | 33 | 137 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Neem_9263_f_13 33 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEqGK 127 89****************************66677899*************************************************66577788 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l++ ++r+ Neem_9263_f_13 128 DRLYIDWRRR 137 8999999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-42 | 26 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-30 | 30 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-27 | 31 | 120 | No hit | No description |
PROSITE profile | PS50863 | 15.002 | 33 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-30 | 33 | 137 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-23 | 33 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MDLSLGSNEE TSAGNGGGDS SRSNIIVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP 60 LDSSSNEKGL LLNFEDRNGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR 120 GVGEQGKDRL YIDWRRRPDA PDPTALAQMQ LQNQLHFQQS VLSYGNAPVQ YYLRPSGSQQ 180 IEAMQEGGNV PMVIDSVPIV HGKSTAAKQL RLFGVNMECS TQGESSSTIV PGYTMSSVSP 240 HLTSSYVPPH QSRERSSASL SRTKQPQYSN KGKSSLSFDL DL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-69 | 26 | 138 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-69 | 26 | 138 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039561.1 | 1e-123 | PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 | ||||
Refseq | XP_021611448.1 | 1e-123 | B3 domain-containing transcription factor NGA1-like isoform X2 | ||||
Swissprot | O82799 | 3e-83 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A2C9VSH1 | 1e-122 | A0A2C9VSH1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008697m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 7e-84 | B3 family protein |