PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9263_f_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 137aa MW: 16183.4 Da PI: 7.1113 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.2 | 2e-33 | 6 | 116 | 3 | 112 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 G+rF+P+ +e+++++L +k++g+++++ + ++evdi+k+ePw+Lp ++v +++ew fF+k k a++ r+ r+tk+g Wk tg+d+++l+ Neem_9263_f_10 6 LGYRFRPSGQEIIKFFLDRKMHGDEFHV-RLVNEVDICKFEPWELPhQSVIPDDEEWCFFHKPTPKCANSGRTDRTTKAGHWKVTGNDHPILDDs 99 59**************************.89***************556666999*************************************986 PP NAM 96 kgelvglkktLvfykgr 112 +++++g kktLvfy+gr Neem_9263_f_10 100 EEQEIGFKKTLVFYRGR 116 7788**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.083 | 4 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-35 | 6 | 117 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-14 | 7 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDYNYLGYRF RPSGQEIIKF FLDRKMHGDE FHVRLVNEVD ICKFEPWELP HQSVIPDDEE 60 WCFFHKPTPK CANSGRTDRT TKAGHWKVTG NDHPILDDSE EQEIGFKKTL VFYRGRGLFT 120 YSILAVLQNI LWRAACK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-22 | 7 | 117 | 20 | 127 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-22 | 7 | 117 | 20 | 127 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-22 | 7 | 117 | 20 | 127 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-22 | 7 | 117 | 20 | 127 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swm_B | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swm_C | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swm_D | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swp_A | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swp_B | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swp_C | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
3swp_D | 1e-22 | 7 | 117 | 23 | 130 | NAC domain-containing protein 19 |
4dul_A | 1e-22 | 7 | 117 | 20 | 127 | NAC domain-containing protein 19 |
4dul_B | 1e-22 | 7 | 117 | 20 | 127 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491405.1 | 1e-47 | protein NTM1-like 9 | ||||
Refseq | XP_006491410.1 | 8e-48 | NAC domain-containing protein 71-like | ||||
Refseq | XP_024043356.1 | 7e-48 | NAC domain-containing protein 71-like | ||||
TrEMBL | V4TC69 | 2e-41 | V4TC69_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491405.1 | 4e-47 | (Citrus sinensis) | ||||
STRING | XP_006491410.1 | 3e-47 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18606 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-30 | NAC domain containing protein 71 |