PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9167_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 20249 Da PI: 10.601 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 27 | 62 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Neem_9167_f_3 27 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 62 6667889****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.13E-10 | 26 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-11 | 26 | 65 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.78E-5 | 26 | 63 | No hit | No description |
Pfam | PF00249 | 4.2E-6 | 27 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-6 | 28 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSTSTSYHLG EEEIWLVITH IARPWLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ 60 KYFIRLNSMN KDRRRSSIHD ITSVNNGDIS APQGPITGQT NGSGAGGSTG KSSKQPQQHP 120 TGPPGVGMYG APTIGQPIGP LVSAVGTPVN LPAPAHMAYG VRAPVPGAVV PGAPMNMAPV 180 PYPMPHTSAH R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022763892.1 | 1e-102 | transcription factor SRM1-like | ||||
Refseq | XP_022763893.1 | 1e-102 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 9e-72 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1R3I6D4 | 1e-103 | A0A1R3I6D4_COCAP; Uncharacterized protein | ||||
STRING | Gorai.013G067600.1 | 1e-100 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-55 | MYB family protein |
Publications ? help Back to Top | |||
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