PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9167_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 191aa    MW: 20249 Da    PI: 10.601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9167_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-0827621247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
    Neem_9167_f_3 27 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 62
                     6667889****************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.13E-102668IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-112665IPR006447Myb domain, plants
CDDcd001672.78E-52663No hitNo description
PfamPF002494.2E-62762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-62861IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSTSTSYHLG EEEIWLVITH IARPWLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ  60
KYFIRLNSMN KDRRRSSIHD ITSVNNGDIS APQGPITGQT NGSGAGGSTG KSSKQPQQHP  120
TGPPGVGMYG APTIGQPIGP LVSAVGTPVN LPAPAHMAYG VRAPVPGAVV PGAPMNMAPV  180
PYPMPHTSAH R
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022763892.11e-102transcription factor SRM1-like
RefseqXP_022763893.11e-102transcription factor SRM1-like
SwissprotQ9FNN69e-72SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1R3I6D41e-103A0A1R3I6D4_COCAP; Uncharacterized protein
STRINGGorai.013G067600.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-55MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]