PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9158_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CPP | ||||||||
Protein Properties | Length: 523aa MW: 57145.4 Da PI: 6.3132 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 21.1 | 6.3e-07 | 10 | 35 | 16 | 42 |
TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42 +YCeCfa+g +C+ C+C +C+N+ e+ Neem_9158_f_1 10 QYCECFASGIYCDG-CNCVNCHNNVEN 35 7*************.********9875 PP | |||||||
2 | TCR | 51.1 | 2.6e-16 | 80 | 119 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Neem_9158_f_1 80 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 119 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 31.504 | 1 | 120 | IPR005172 | CRC domain |
SMART | SM01114 | 0.002 | 10 | 35 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.4E-4 | 10 | 32 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 80 | 121 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.8E-13 | 83 | 118 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MTNDDSLICQ YCECFASGIY CDGCNCVNCH NNVENEAARR EAVEATLERN PNAFRPKIAS 60 SPHGTRDNRE ETGEFLMLGK HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG 120 SEERQALFHG DHANNMAYIQ QAANAAITGA IGSSGYASPP VSKKRKGKFF YCCFLLVYVA 180 NHIRPSTSST LSSIPVARAS SNAAMAPSKF TYRSLLADII QPQDLKELCS VLVVVAAEAA 240 KSLTDQRNAT EKQAEDQTAT SLASSGQDRL QSHKDSDVER TVTDDCSSAN QADKVGPDDS 300 GSDGSDVQKA RPMSPGTLAL MCDEQDTMFV ATASPNRLTR HGCNASSQLP YGQDMTEVYA 360 EQERDILLGK LVWHAFLQLV NFKIQTSVTE RLQLAHYEVS WSPSALFSLF LVIPCMLFAC 420 CDCWELMIHF HSNITETKFS SLSRSDLGSQ KDPLSNGRTE VGNQQAPVNN GIPKVFGSST 480 LAPPASKMSQ MVTTAIAISN DDPLRISALP GERDVKSKTE NKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 9e-27 | 11 | 129 | 25 | 132 | Protein lin-54 homolog |
5fd3_B | 9e-27 | 11 | 129 | 25 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475649.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Refseq | XP_024952904.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-160 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A067DUG9 | 0.0 | A0A067DUG9_CITSI; Uncharacterized protein | ||||
STRING | XP_006475649.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-135 | Tesmin/TSO1-like CXC domain-containing protein |