PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9117_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 322aa    MW: 34864 Da    PI: 8.7227
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9117_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.94.4e-30145201158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++I++RR++Rak+  e+kl +k rkpy+h SRh hA+rRpRg+gGrF
  Neem_9117_f_3 145 DGPIYVNAKQYHGIMRRRKSRAKAVLENKL-TKRRKPYMHYSRHLHAMRRPRGCGGRF 201
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-34143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.776144204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21147169IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-26147201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAMQTVYFKE HEGNAHNQIG QFSSVQSTPW WTSLGSQSLC GGLMKPFSME TPTEQSGQRM  60
EKGSTTHFTF FPGDSKSSGD GQKLPAAISL QSALPENPGF FELGFGQPMI CAKYPYVDQC  120
CGVFSTYGAQ ISGRIMLPLN LASDDGPIYV NAKQYHGIMR RRKSRAKAVL ENKLTKRRKP  180
YMHYSRHLHA MRRPRGCGGR FLNTRNADGH GNGNGNENGK GGTEEKKAGD PLLPQPTGSQ  240
SSEVLQSESG NSSSPKEANG CGSNVSGSEV TSMYTRGDFD HFPIGHVRPS VHSFSGIMDG  300
GHGIVMPSQW VAAADSCCNL NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16147208465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A1e-16145202260HAPB protein
4g92_A1e-16145202260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163MRRRKS
2160178RRKSRAKAVLENKLTKRRK
3160179RRKSRAKAVLENKLTKRRKP
4161179RKSRAKAVLENKLTKRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430046.11e-177nuclear transcription factor Y subunit A-10
TrEMBLV4T1B61e-176V4T1B6_9ROSI; Uncharacterized protein
STRINGXP_006430046.11e-177(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-67nuclear factor Y, subunit A10