PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_908_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 609aa MW: 68737.5 Da PI: 5.0547 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 7e-19 | 73 | 170 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k+l++sdv++++r++lpkk ae+h + ++e++ +++ d++g +W++k+++ +++s++yvl+ ++ +Fv+ +gL+ gDf++ + + ++ Neem_908_f_2 73 FQKELKNSDVSSLRRMILPKKAAEAHlpilE--SKEGIFISMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVNTHGLQLGDFIIVYQ--DnQN 164 99**************************644..557899********9*******9989999999***9.******************993..3366 PP E..EEE CS B3 90 felvvk 95 +++v++ Neem_908_f_2 165 QNYVIQ 170 666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-27 | 65 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-25 | 71 | 173 | No hit | No description |
SuperFamily | SSF101936 | 4.9E-21 | 71 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-15 | 73 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.827 | 73 | 175 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-19 | 73 | 175 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF118203 | 1.7E-127 | 251 | 594 | IPR004907 | ATPase, V1 complex, subunit C |
Pfam | PF03223 | 2.8E-121 | 256 | 587 | IPR004907 | ATPase, V1 complex, subunit C |
CDD | cd14785 | 7.11E-140 | 256 | 590 | IPR004907 | ATPase, V1 complex, subunit C |
Gene3D | G3DSA:1.20.1460.10 | 3.1E-60 | 292 | 413 | No hit | No description |
Gene3D | G3DSA:3.30.70.100 | 1.0E-32 | 414 | 502 | No hit | No description |
Gene3D | G3DSA:1.20.1460.10 | 3.1E-60 | 503 | 563 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015991 | Biological Process | ATP hydrolysis coupled proton transport | ||||
GO:0033180 | Cellular Component | proton-transporting V-type ATPase, V1 domain | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0015078 | Molecular Function | hydrogen ion transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MMMDQTALTS SVHEKTEACA LMAGVEGVTV KGDKTRFGSD RGGSTSDLVS AVTSLVFSSA 60 AQVIDPNRLR FLFQKELKNS DVSSLRRMIL PKKAAEAHLP ILESKEGIFI SMDDLDGLHV 120 WSFKYRFWPN NNSRMYVLEN TGDFVNTHGL QLGDFIIVYQ DNQNQNYVIQ AKKASDQDMY 180 TNFTSDSVSD ILLNDYEVNR SSSFYVNYPM AEDTGLSFIY DTTTFSNDSP LDFLGGSLTS 240 YSREKTQSGP EMASRYWVVS LPVQNSASTL GNQLQEQISK HSFDTPLYRF NIPNLRVGTL 300 DSLLALSDDL LKSNSFVEGV SHKIRRQIED LEKLSGTESS SLTVDGVPVD SYLTRFVWDE 360 AKYPTMSPLR EIVDAIHTLV AKIEDDLKVR VAEYNNVRSQ LNAINRKQSG SLAVRDLSNL 420 VKPEDIITSE HLVTLLAVVP KYSQKDWLAS YETLTSYVVP RSTKQLYEDN EYALYTVTLF 480 GRVADNFRIA AREKGFQIRD FEYSPEAQES RKQELERLVN DQESLKTSLL NWCYTSYGEV 540 FSSWMHFCAV RIFAESILRY GLPPNFLACV LAPPVKSEKK VCSILEGLSG SANRLYLLIA 600 VLNLYFHDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1u7l_A | 5e-59 | 290 | 585 | 48 | 344 | Vacuolar ATP synthase subunit C |
3j9t_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
3j9u_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
3j9v_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
5vox_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
5voy_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
5voz_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
6j9b_A | 2e-60 | 69 | 178 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-60 | 69 | 178 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6o7v_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
6o7w_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
6o7x_O | 5e-59 | 290 | 585 | 48 | 344 | V-type proton ATPase subunit C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217037 | 4e-44 | AC217037.1 Populus trichocarpa clone POP049-G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446960.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006446962.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468875.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468876.1 | 0.0 | V-type proton ATPase subunit C | ||||
Refseq | XP_006468877.1 | 0.0 | V-type proton ATPase subunit C | ||||
Swissprot | Q9SDS7 | 0.0 | VATC_ARATH; V-type proton ATPase subunit C | ||||
TrEMBL | A0A067E0G2 | 0.0 | A0A067E0G2_CITSI; V-type proton ATPase subunit C | ||||
TrEMBL | A0A2H5Q4L7 | 0.0 | A0A2H5Q4L7_CITUN; V-type proton ATPase subunit C | ||||
TrEMBL | V4U2W4 | 0.0 | V4U2W4_9ROSI; V-type proton ATPase subunit C | ||||
STRING | XP_006468875.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006446960.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 2e-75 | B3 family protein |
Publications ? help Back to Top | |||
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