PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9070_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 302aa MW: 32772.4 Da PI: 7.812

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9070_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.7	6.8e-32	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++ Neem_9070_f_2 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 6********************************************************************************************* PP DUF260 92 aelallkee 100 +e++l +++ Neem_9070_f_2 100 VEAVLKGQP 108 9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	9.6E-97	1	300	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.21	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT PINSEAAAIG 120 QGPPLKAYDI RHVSKDENSA ASVDRVKTRC RVKRVVKPKA SKAEQVKAAD VPVRCVEAKC 180 YAEEMNRSTS HESSLSHQSE VAIAENESKD SESMVSVETA EAASLLFRAE PESNAKPDER 240 VAQDCGGGEI GLGLELTLGI EPVASRANHV VPVKKRKLES YGTWEGDTCK VELGLDYPAQ 300 VQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024037317.1	0.0	LOB domain-containing protein 40
Swissprot	Q9M886	1e-110	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	V4SY62	1e-179	V4SY62_9ROSI; Uncharacterized protein
STRING	XP_006430780.1	1e-179	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-98	LOB domain-containing protein 41