PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9045_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 325aa    MW: 36253.9 Da    PI: 5.1282
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9045_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35101022103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F++k+y++++d++++ li+w   +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i
  Neem_9045_f_2  10 FVMKTYQMVNDPTTDMLITWGIANNSFIVVEPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLKNI 96 
                    9********************888*****************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                     r+k++
  Neem_9045_f_2  97 IRRKHS 102
                    999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.9E-52699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-36799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-31799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESNNVIAPF VMKTYQMVND PTTDMLITWG IANNSFIVVE PLDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK HLLKNIIRRK HSKSGAYLLK GEDLDDEEIV  120
MEIARLKEEQ KSLEEELQGM NKRLEATERR PEQMMAFLYK VAEDPDLLPR MVLEKERTKR  180
LGEKKRRLMI SSSQQPSSSS SGMAASSSIK SEEEEADGPL GLISSADSRF DTNFCQSSPS  240
PENNNDNNIS TGWFGQSRPI INYGCAAIPT PISAIPGTSG IANSMAVAAQ GNSISGQISY  300
FGEMATGGEP SPPPPYPFSL LGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2479926129Heat shock factor protein 1
5d5v_B4e-2479926129Heat shock factor protein 1
5d5v_D4e-2479926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324418.21e-150heat stress transcription factor C-1
SwissprotQ9LV521e-101HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLB9ILM21e-148B9ILM2_POPTR; Uncharacterized protein
STRINGcassava4.1_010201m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-92heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]