PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9015_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CAMTA

Protein Properties

Length: 882aa MW: 100033 Da PI: 7.4097

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9015_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	96	3.1e-30	25	101	2	77
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg 77 ++e k+rwl+++ei+aiL n + +++ +++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LK +g Neem_9015_f_2 25 MEEaKSRWLRPNEIHAILCNSKYFNINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKLQG 101 55669**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	43.816	21	156	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.5E-32	24	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-25	27	102	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	8.54E-9	343	418	IPR014756	Immunoglobulin E-set
Pfam	PF12796	1.8E-7	516	596	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.00E-15	516	626	No hit	No description
SuperFamily	SSF48403	2.02E-17	517	631	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-15	524	637	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.141	534	599	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.701	567	599	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-6	567	596	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	8.76E-9	619	781	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	240	677	699	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.852	715	741	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	47	730	752	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.016	731	760	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0026	753	775	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.2	754	778	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.3E-4	755	775	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	835	857	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.187	837	865	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MAEQLFGSEI HGFRTLKDLE VDNMMEEAKS RWLRPNEIHA ILCNSKYFNI NAKPVNLPKS 60 GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKLQ GSPVTPPNSL SSSVSDQSTP 120 LLLSQEFDSG KKGLQEPNDS LTVRNHEMRL HEINTLEWDE LVVANDPNGS TAPREDKVSY 180 FDQQNQTAIS GAIDDSSLPP YDLYTEVSSV FNMSQPIAKS DNAQFNNLDV VYGQLMGSQL 240 NESIQKKESV VGSGDTLDIL AGDGLQSQDS FGRWMNYLMT DSPGPVLDSS ISSVHQQDTV 300 PEHVFSITDV SPAWAFSGEK TKALHELGNE YFNHRCIFSG YHVHHSLVLV TGFFREDSLH 360 LVKSNMFCVC GDVCVPVELV QVGVYRCWLP QHSPGLVHLY MSLDGHKPIS EILNFEYRAP 420 QLQEPTVSSE DMSKWEELQV QMRLSYLLFS TFRGLNILSG KVPPNALKEA KKFALKTSHI 480 SNSWAYLAKL IENNRALFPE AKDSLFELTL KNKLKEWLLE RVVEGCKTTE YDVQGQGVIH 540 LCSILGYTWA VYLFSWSGLS LDFRDKYGWT ALHWAAFYGR EKMVAVLLSA GAKPNLVTDP 600 TSENPGGCTA ADLAYKKGYD GLAAFLSEQC LVAQFNDMNI AGNISGSLQT SSAETVDTQN 660 LTEDEVYLKD TLTAYRTAAE AAARIQAAFR EHSLKVQAKT VQFSNPEDEA QNIIAAMKIQ 720 HAFRNYERRK KMTAAAHIQH RFRSWKVRKE FLNKRRQAIK IQAAFRGFQV RKQYRKILWS 780 VGVLEKAVLR WRLKRKGFRG LQVDPIAVEA VADQKQESDT EEDFYRTSRK QAEERVERSV 840 VRVQAMFRSK KAQEEYRRMK LAHNQAKLEY EGLLDPDAYM DG

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MAEQLFGSEI HGFRTLKDLE VDNMMEEAKS RWLRPNEIHA ILCNSKYFNI NAKPVNLPKS  60
GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKLQ GSPVTPPNSL SSSVSDQSTP  120
LLLSQEFDSG KKGLQEPNDS LTVRNHEMRL HEINTLEWDE LVVANDPNGS TAPREDKVSY  180
FDQQNQTAIS GAIDDSSLPP YDLYTEVSSV FNMSQPIAKS DNAQFNNLDV VYGQLMGSQL  240
NESIQKKESV VGSGDTLDIL AGDGLQSQDS FGRWMNYLMT DSPGPVLDSS ISSVHQQDTV  300
PEHVFSITDV SPAWAFSGEK TKALHELGNE YFNHRCIFSG YHVHHSLVLV TGFFREDSLH  360
LVKSNMFCVC GDVCVPVELV QVGVYRCWLP QHSPGLVHLY MSLDGHKPIS EILNFEYRAP  420
QLQEPTVSSE DMSKWEELQV QMRLSYLLFS TFRGLNILSG KVPPNALKEA KKFALKTSHI  480
SNSWAYLAKL IENNRALFPE AKDSLFELTL KNKLKEWLLE RVVEGCKTTE YDVQGQGVIH  540
LCSILGYTWA VYLFSWSGLS LDFRDKYGWT ALHWAAFYGR EKMVAVLLSA GAKPNLVTDP  600
TSENPGGCTA ADLAYKKGYD GLAAFLSEQC LVAQFNDMNI AGNISGSLQT SSAETVDTQN  660
LTEDEVYLKD TLTAYRTAAE AAARIQAAFR EHSLKVQAKT VQFSNPEDEA QNIIAAMKIQ  720
HAFRNYERRK KMTAAAHIQH RFRSWKVRKE FLNKRRQAIK IQAAFRGFQV RKQYRKILWS  780
VGVLEKAVLR WRLKRKGFRG LQVDPIAVEA VADQKQESDT EEDFYRTSRK QAEERVERSV  840
VRVQAMFRSK KAQEEYRRMK LAHNQAKLEY EGLLDPDAYM DG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488865.1	0.0	calmodulin-binding transcription activator 5
Refseq	XP_024036941.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A067G8L6	0.0	A0A067G8L6_CITSI; Uncharacterized protein
STRING	XP_006488865.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]