PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_898_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26795.7 Da PI: 7.8283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 22 | 67 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT eE +++ +a ++l + +++Ia +++ g++l q+k++++ Neem_898_f_2 22 TEWTWEENKKFENALAELDLEsphLFELIALRVP-GKSLSQIKEHYN 67 68*****************999999*********.***********8 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.6e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+el++++ + +G g+W++I+r+ ++t+ q+ s+ qk+ Neem_898_f_2 132 PWTSEEHELFLQGLQIYGRGDWRSISRHCVRTKTPIQIASHAQKH 176 7****************************99************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.363 | 19 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 4.6E-8 | 20 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-4 | 20 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.9E-8 | 22 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 22 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-6 | 23 | 70 | No hit | No description |
PROSITE profile | PS51294 | 17.645 | 124 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-17 | 126 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-15 | 128 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-9 | 129 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 130 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.43E-10 | 132 | 177 | No hit | No description |
Pfam | PF00249 | 1.7E-10 | 132 | 176 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MESSHSHSQS QSMLSLSNSE KTEWTWEENK KFENALAELD LESPHLFELI ALRVPGKSLS 60 QIKEHYNALV EDIQLIEADL VPLPNYKNNV KGKGHVTEAE TRTHNKTVNK GKGRVLEAEK 120 KTSNQSRKKG IPWTSEEHEL FLQGLQIYGR GDWRSISRHC VRTKTPIQIA SHAQKHFIRL 180 QKQNSGANNK VDSASTPNNE ISTAANNTAC HQLSSGSSFA DASDIAGQYF PSDYWNHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028074066.1 | 4e-54 | transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 4e-46 | SRM1_ARATH; Transcription factor SRM1 | ||||
STRING | POPTR_0007s08530.1 | 2e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-46 | MYB family protein |
Publications ? help Back to Top | |||
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