PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8985_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 993aa MW: 109728 Da PI: 6.6075

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8985_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.6e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Neem_8985_f_1 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-33	142	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.385	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.28E-39	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.6E-30	150	223	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.4E-5	737	849	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.11E-6	737	849	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.21E-6	738	849	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
METRFIGEAH HIYGMNSMDL RAVGKRTLEW DLNDWKWDGD LFIASPLNPV PNDNIGQKFF 60 PLGTGNSSNS SSSCSEEVNL GIEKGKKELE KKRRAIVVED HNSYEAAAGG LTLKLGGNGY 120 PLTEREMGNW AGTSGKKTKF GGGSSRRAVC QVEDCGADLS NAKDYHRRHK VCEMHSKASR 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDAVG NGSSLNDDQT 240 SGYLLISILR ILSNMHSNRS DQRTDQDLLS HLLRSLANPA GENGGRGISG LLQEPQDMLT 300 DRTSVGNSEV VSAMLANGQG TPGPFRQPLT AMVSEMPHQG SQSHTTRVAE VQNDEDIERL 360 PVPANPGTSS LDCPSWVQLD SQQSSPPQTS GNSDSASAQS PSSSSDAQSR TDRIVFKLFG 420 KEPNDFPLVL RAQILDWLSH SPTDMESYIR PGCVILTIYL RQAEAAWEEL CCDLTFSLSR 480 LLGLSDDSFW TNGWVYVRVQ HQIAFIYDGQ VVVDTSLPLR SNNHSKILSV KPIAVSASER 540 VQFLVKGNKL ARPATRLLCA VEGKYMVQEA TYEMDDVESF KDHDELHCVN FSCSIPVVTG 600 RGFIEIEDHG FGSSFFPFIV AEEDVCSEIR MLESALEFNG TDADVEQFGK TETKNQAMDF 660 IHEIGWLFHR SQLKSRLGHL DPNTDLFPLR RFKWLIEFSM DHEWCAVVKK LLNILLDGNV 720 GSGEHSSVDI ALSELGLLHR AVRKNCHPLV DLLLRFVPEK VSDRLEPGKE AQADGGHKGF 780 IFRPDVIGPA GLTPLHIAAG KDGSEDVLDA LTDDPGKVGI EAWKNAHDSS GSTPEDYARL 840 RGHYSYIHLV QRKINKRLAA GHVVVDIPGV IPDSNINQKQ SNELTASFEI GQTAVKPVQR 900 NCNLCHQKLA FRTASSGSLV YRPAMLSMVA IAAVCVCVAL LFKSCPEVLR PAMLSMVAIA 960 AVCVCVALLF KSCPEVLYVF RPFRWEMLDF GAS

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

METRFIGEAH HIYGMNSMDL RAVGKRTLEW DLNDWKWDGD LFIASPLNPV PNDNIGQKFF  60
PLGTGNSSNS SSSCSEEVNL GIEKGKKELE KKRRAIVVED HNSYEAAAGG LTLKLGGNGY  120
PLTEREMGNW AGTSGKKTKF GGGSSRRAVC QVEDCGADLS NAKDYHRRHK VCEMHSKASR  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDAVG NGSSLNDDQT  240
SGYLLISILR ILSNMHSNRS DQRTDQDLLS HLLRSLANPA GENGGRGISG LLQEPQDMLT  300
DRTSVGNSEV VSAMLANGQG TPGPFRQPLT AMVSEMPHQG SQSHTTRVAE VQNDEDIERL  360
PVPANPGTSS LDCPSWVQLD SQQSSPPQTS GNSDSASAQS PSSSSDAQSR TDRIVFKLFG  420
KEPNDFPLVL RAQILDWLSH SPTDMESYIR PGCVILTIYL RQAEAAWEEL CCDLTFSLSR  480
LLGLSDDSFW TNGWVYVRVQ HQIAFIYDGQ VVVDTSLPLR SNNHSKILSV KPIAVSASER  540
VQFLVKGNKL ARPATRLLCA VEGKYMVQEA TYEMDDVESF KDHDELHCVN FSCSIPVVTG  600
RGFIEIEDHG FGSSFFPFIV AEEDVCSEIR MLESALEFNG TDADVEQFGK TETKNQAMDF  660
IHEIGWLFHR SQLKSRLGHL DPNTDLFPLR RFKWLIEFSM DHEWCAVVKK LLNILLDGNV  720
GSGEHSSVDI ALSELGLLHR AVRKNCHPLV DLLLRFVPEK VSDRLEPGKE AQADGGHKGF  780
IFRPDVIGPA GLTPLHIAAG KDGSEDVLDA LTDDPGKVGI EAWKNAHDSS GSTPEDYARL  840
RGHYSYIHLV QRKINKRLAA GHVVVDIPGV IPDSNINQKQ SNELTASFEI GQTAVKPVQR  900
NCNLCHQKLA FRTASSGSLV YRPAMLSMVA IAAVCVCVAL LFKSCPEVLR PAMLSMVAIA  960
AVCVCVALLF KSCPEVLYVF RPFRWEMLDF GAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	143	223	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444595.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A067H7A4	0.0	A0A067H7A4_CITSI; Uncharacterized protein
STRING	XP_006444595.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]