PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8930_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CPP

Protein Properties

Length: 909aa MW: 98627.8 Da PI: 5.8308

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8930_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.3	1.9e-15	504	542	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk++Clk+YC+Cfaag +C+e C C++C+N+ e Neem_8930_f_7 504 CKRCNCKKTRCLKLYCDCFAAGIYCAEPCACQGCFNRPE 542 79**********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	6.4E-16	502	543	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	16.093	503	566	IPR005172	CRC domain
Pfam	PF03638	3.0E-11	505	540	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDSPETTAKT NTAVCSSFSA ATATTNASST SSPPVQESPF SNFVSNLSPI KPVKGSHGLQ 60 GLLGLNSPPL VFTSPHTNVP RETGFLKRLP CHQSPSAEMS QNDDGGKKFA DGPCALEKSG 120 SLLQDGLVID TWKENDMRSS LQVQPSTSSG CVDEYLTDPV DVDCASSGYG VNTNTLQSSV 180 SGRTDSQETL SKFDDKNDRV SKVDVAVDIF REAEDNIHGK ATRDIKTNEQ IEFNSSLDYA 240 SKKQQSENSS AQNAGSAPRG ESDCPLQLLS EPLQTLQTYN DSLENAGVIA HGPDDNAMHD 300 LEASKQQRGM SRRCLQFAEA QPKATVDGTN PSIKSNDATS ARSSPSLVES ESLDSSYVDL 360 NAASGKRQPT NLPQPTTPMF PPRYTGRSPL TVSKPSGIGL HLNSIVNALP KGGGAIVGVK 420 LASAEHEILE NKASISVSSL ISESFDDTVS LNWLPQVDHN TTPHIKRKFN SEQTDSFEEF 480 CPLSPKRKRQ TLKKSSSTVD GDGCKRCNCK KTRCLKLYCD CFAAGIYCAE PCACQGCFNR 540 PEYEDTVLET RQQIESRNPL AFAPKIVQRV AEFVVNIGLL YPLSSVSFII FFSDFLLFNL 600 AILAVFACYR MMATILPHPQ VGTKEAATAK SHSVLKSIVN AIRLMLDVQV DVDVRVVKIC 660 MARRKQQTNE EYVGNEEIMS NRAISEGTSD AKLEMVINKR DFLHAELYDP HNLTPLTPSF 720 QCLDRAKDAS KSRILSSRYV PSPESDLTIL SSYAKSPRSL KNSEGNEMLL EANKEILDVE 780 SCCQGRDYSN TDVVDQFSSR NSLAGLCDFP PVPGFPSMAV ASSGSSKATD CTNISRLQLC 840 PRSGNLSSGG SLRWRSSPIT PMTQLAVGLR LSPEDIITSS AIASGLDTKI PSDLRNILWC 900 VAISTQLIF

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDSPETTAKT NTAVCSSFSA ATATTNASST SSPPVQESPF SNFVSNLSPI KPVKGSHGLQ  60
GLLGLNSPPL VFTSPHTNVP RETGFLKRLP CHQSPSAEMS QNDDGGKKFA DGPCALEKSG  120
SLLQDGLVID TWKENDMRSS LQVQPSTSSG CVDEYLTDPV DVDCASSGYG VNTNTLQSSV  180
SGRTDSQETL SKFDDKNDRV SKVDVAVDIF REAEDNIHGK ATRDIKTNEQ IEFNSSLDYA  240
SKKQQSENSS AQNAGSAPRG ESDCPLQLLS EPLQTLQTYN DSLENAGVIA HGPDDNAMHD  300
LEASKQQRGM SRRCLQFAEA QPKATVDGTN PSIKSNDATS ARSSPSLVES ESLDSSYVDL  360
NAASGKRQPT NLPQPTTPMF PPRYTGRSPL TVSKPSGIGL HLNSIVNALP KGGGAIVGVK  420
LASAEHEILE NKASISVSSL ISESFDDTVS LNWLPQVDHN TTPHIKRKFN SEQTDSFEEF  480
CPLSPKRKRQ TLKKSSSTVD GDGCKRCNCK KTRCLKLYCD CFAAGIYCAE PCACQGCFNR  540
PEYEDTVLET RQQIESRNPL AFAPKIVQRV AEFVVNIGLL YPLSSVSFII FFSDFLLFNL  600
AILAVFACYR MMATILPHPQ VGTKEAATAK SHSVLKSIVN AIRLMLDVQV DVDVRVVKIC  660
MARRKQQTNE EYVGNEEIMS NRAISEGTSD AKLEMVINKR DFLHAELYDP HNLTPLTPSF  720
QCLDRAKDAS KSRILSSRYV PSPESDLTIL SSYAKSPRSL KNSEGNEMLL EANKEILDVE  780
SCCQGRDYSN TDVVDQFSSR NSLAGLCDFP PVPGFPSMAV ASSGSSKATD CTNISRLQLC  840
PRSGNLSSGG SLRWRSSPIT PMTQLAVGLR LSPEDIITSS AIASGLDTKI PSDLRNILWC  900
VAISTQLIF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483326.1	0.0	CRC domain-containing protein TSO1
TrEMBL	A0A2H5NY77	0.0	A0A2H5NY77_CITUN; Uncharacterized protein
STRING	XP_006483326.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-33	Tesmin/TSO1-like CXC domain-containing protein