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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_8900_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 258aa MW: 28524.9 Da PI: 9.3561 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 14.8 | 8.2e-05 | 85 | 105 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++C+k Fs++ L H++ H
Neem_8900_f_1 85 CKYCSKKFSNSQALGGHQNAH 105
******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.30.160.60 | 5.1E-6 | 70 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 3.36E-7 | 79 | 110 | No hit | No description |
| PROSITE profile | PS50157 | 11.926 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 258 aa Download sequence Send to blast |
MKKFEDKKMK GKVGEEEEAI SELHNCSLDL RLSNIVNEFD NQKSNPELNL LDSLDADLSK 60 GSESSEQKIM RSHANKAVGK KLFLCKYCSK KFSNSQALGG HQNAHKKERA ALRKDKNNNN 120 NNLVSFDQVS GPLIYPQPIT GSFDGSLGVQ VHSMIHKPYN YYHPLVHVIN RPQFPMHRNT 180 SADYWVPNGG FQVQPVGNMG FNRTVAPCGT FQSAFQPNSE AAATSKTPFP GQGSFWRGGF 240 SGNNQHGESA GPNLSLNL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | V4T2K6 | 1e-65 | V4T2K6_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006430491.1 | 2e-66 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM21300 | 5 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G10970.1 | 8e-15 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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