PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8849_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GeBP

Protein Properties

Length: 401aa MW: 44243.8 Da PI: 4.3218

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8849_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.1	1.1e-37	117	212	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d+ +++g + d+ fy+++k++++++++k+qlveK+rrLKkK+++ v+k++sgk++sf+++hdq +fe+s+kiW Neem_8849_f_2 117 LFQRLWTDEDEIELLQGFLDYSTQRGNAHHLDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVVNKISSGKDFSFKTAHDQATFEISRKIWS 212 79**********************99999**************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-34	118	212	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MASEQHDTVL PEEDQDLDED EESSEDDDLE ENDDVLADEE EDDDEEDLNS ASTTAVATPA 60 ITVAFPPSSV SATTVTVALP PSVIDEPDPK RQCVDEGVTV QEERKPLPQQ LDESRRLFQR 120 LWTDEDEIEL LQGFLDYSTQ RGNAHHLDTA LFYDQIKSKL QLDFNKNQLV EKLRRLKKKY 180 RNVVNKISSG KDFSFKTAHD QATFEISRKI WSNNTTTNVS VLDEEEANHN NNNLVVSHEM 240 KTNNYGLISS NNNEEKVTPK SRKRSRSKTV GNDNINAGLI SNSENLNVTS GGGNGIAGVV 300 EETVRSCLSP LFRELLHNVM GGVGGRGIGG LTVNSVMPLG FGGTGMGVAM MGFGGSAGGG 360 EVVDEKWRKQ QILELEVYSK RLELVQDQIK VALEELRSMG G

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MASEQHDTVL PEEDQDLDED EESSEDDDLE ENDDVLADEE EDDDEEDLNS ASTTAVATPA  60
ITVAFPPSSV SATTVTVALP PSVIDEPDPK RQCVDEGVTV QEERKPLPQQ LDESRRLFQR  120
LWTDEDEIEL LQGFLDYSTQ RGNAHHLDTA LFYDQIKSKL QLDFNKNQLV EKLRRLKKKY  180
RNVVNKISSG KDFSFKTAHD QATFEISRKI WSNNTTTNVS VLDEEEANHN NNNLVVSHEM  240
KTNNYGLISS NNNEEKVTPK SRKRSRSKTV GNDNINAGLI SNSENLNVTS GGGNGIAGVV  300
EETVRSCLSP LFRELLHNVM GGVGGRGIGG LTVNSVMPLG FGGTGMGVAM MGFGGSAGGG  360
EVVDEKWRKQ QILELEVYSK RLELVQDQIK VALEELRSMG G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471737.1	1e-168	probable transcription factor At3g04930
Refseq	XP_024040487.1	1e-168	probable transcription factor At3g04930
Swissprot	F4K5T4	3e-91	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A067EQU3	1e-166	A0A067EQU3_CITSI; Uncharacterized protein
STRING	XP_006471737.1	1e-167	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	7e-80	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]