PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8636_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 284aa    MW: 30571.2 Da    PI: 8.2852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8636_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045138160123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C++sF++   L  H  +H
  Neem_8636_f_2 138 YECKTCNRSFPSFQALGGHRASH 160
                    99**********99999998887 PP
2zf-C2H213.40.00024208230123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  F++   L  H+r+H
  Neem_8636_f_2 208 HECSICGSEFTSGQALGGHMRRH 230
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.92E-9137160No hitNo description
PfamPF139122.0E-13137162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741138165IPR007087Zinc finger, C2H2
SMARTSM003550.06138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-9203230No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4203230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019208230IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-11208231IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGSEDQSQNF VKGKGKGKRT KRPRSSSPFG LASTMTDSSS SGSGSAVRGG GERGVAMDDY  60
NSISSPTTSG EIYESTEEEE DMANCLIMLA QGDRPRSQIQ ENSIAELKME KLSNISGKFS  120
CAVASTSTNN KAAGFYVYEC KTCNRSFPSF QALGGHRASH KKPKTVVLEE KKPTVIAALP  180
EYSEEGQQFN KSSPPLVANN TIKGNKIHEC SICGSEFTSG QALGGHMRRH RVKPAAAGGR  240
SILPLDLNLP APEDDHHLRD SKFQFGSTQQ VLVFSAPALV DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484999.19e-90PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-66ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A1R3IPB75e-89A0A1R3IPB7_COCAP; Zinc finger, C2H2-like protein
STRINGGorai.006G104800.13e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-58C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]