PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8631_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 296aa MW: 35183.3 Da PI: 4.3963

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8631_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.8	7.6e-10	62	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsess......stcpyfdqle 86 Wt++e +L+e+ e+ +l+r++l+ +W evs+k+ ++ ++e++ qC++ ++ l+++y k+k+ k++ +++ s++++f++++ Neem_8631_f_5 62 WTEHEAFVLLEIWGERFLQLGRKSLRTEDWLEVSEKVtEALKVEKTEAQCRQMMDVLKRKYTKEKRKYTKEKVKVEqmgvngSKWVFFKKMD 153 ***********************************77899*******************99988776433321122226788888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-15	61	155	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDDTEDDARY PPKSYSLNRQ KLPLYSRPIK NRFQYEEEDE DEEIDDHIEE LAPRSVKLSY 60 DWTEHEAFVL LEIWGERFLQ LGRKSLRTED WLEVSEKVTE ALKVEKTEAQ CRQMMDVLKR 120 KYTKEKRKYT KEKVKVEQMG VNGSKWVFFK KMDMLMDMRK ESGGLACGID SGEYVFMDTK 180 VYLDRSNGFD EMRDSPSESE VEEEAEEKDN SEESLASLRM LADSVNKFGE IYEKIENSKR 240 EQMMELERMR MDFHRELELQ KKQILERAQV EIEKIREGDD DRDTDGDGDS MENLSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451106.1	1e-136	trihelix transcription factor ASIL1
TrEMBL	V4UPH6	1e-134	V4UPH6_9ROSI; Uncharacterized protein
STRING	XP_006451106.1	1e-135	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-80	Trihelix family protein