PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8605_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 318aa MW: 35425.1 Da PI: 9.8617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.8 | 9.4e-33 | 153 | 255 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++++l Neem_8605_f_1 153 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGSTSKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGTDKQL 248 89****************************88889****************************************************886688888 PP EEEEE-S CS B3 93 vvkvfrk 99 ++ + ++ Neem_8605_f_1 249 FIDWKSR 255 8887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-42 | 146 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-31 | 151 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-28 | 152 | 241 | No hit | No description |
PROSITE profile | PS50863 | 14.353 | 153 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-25 | 153 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-30 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDATSIDEST TTDSTSISPP AFSPFPATAT KSPESFCRVG SGNSSVILDS EGGVEAESRK 60 LPSSKYKGVR FRGRDAVTNF KQMPEADEDD IEITFLNAHS KGEIVDMLRK HTYNDELEQS 120 KRNYGLDGNG KRIKVSDGVV GSDRVMKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP 180 LQNGSTSKGV LLNFEDVTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDIVSFHR 240 STGTDKQLFI DWKSRTGSGV ENPVEPVQMM RLFGVNIFKI PVNGVVDKIG GCNNGKRLRE 300 MELLSLESSK KQRMIGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-61 | 150 | 261 | 11 | 123 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484413.1 | 1e-172 | AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9C6M5 | 1e-116 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2H5P3U3 | 1e-171 | A0A2H5P3U3_CITUN; Uncharacterized protein | ||||
STRING | XP_006484413.1 | 1e-171 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-109 | RAV family protein |