PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_856_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

DBB

Protein Properties

Length: 206aa MW: 22827.9 Da PI: 5.6017

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_856_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.1	6.6e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC dC ++ H H++vpl Neem_856_f_3 4 QCNGCEAAEAKVLCCADEAALCWDCDQKVHAAnklaskHQRVPL 47 6****99*******************66899999999986 PP
2	zf-B_box	31.5	3.8e-10	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC++++e +fC +++ llC++C + +H H Neem_856_f_3 52 SQMPKCDLCQEAIGYFFCLEDRALLCQKCDVGIHTAnsyvssH 94 689******999******************554555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.793	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.38E-8	3	47	No hit	No description
SMART	SM00336	1.5E-10	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.9E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.902	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-8	53	94	IPR000315	B-box-type zinc finger
CDD	cd00021	4.51E-7	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MRIQCNGCEA AEAKVLCCAD EAALCWDCDQ KVHAANKLAS KHQRVPLFHS SSQMPKCDLC 60 QEAIGYFFCL EDRALLCQKC DVGIHTANSY VSSHQRFLLT GVKVGLGSTE SCVSFTMNKL 120 DSIEKASETE WSQSISRRDA RMLSTCEATR ILDERIGGVG GTITAKSKEA FTGDMTTGIT 180 PKWHLDEYLA LTDFSQNYEV MDNVNF

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047163.1	1e-103	B-box zinc finger protein 22 isoform X1
Swissprot	Q9SYM2	7e-70	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A2H5QVP1	1e-101	A0A2H5QVP1_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006448008.1	1e-102	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-72	light-regulated zinc finger protein 1