PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_854_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 608aa    MW: 69209.2 Da    PI: 6.4714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_854_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.25.2e-3279170291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p
  Neem_854_f_6  79 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 170
                   9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-3079170IPR004330FAR1 DNA binding domain
PfamPF044345.7E-12381427IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.214393429IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-9404431IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDSEVLEFDI GLGGGSSGRD GDDDAMDISH HVDEEDMVDS PLPITAGGSG EIFLPEGDLL  60
DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKHPH FEAEFHKCVN LTESIEEFES  240
CWLSLVDRYE LRDHEWLQTI YAARRQWVPV YLRDTFFAEM SITQRSDSMN SYFDGYVNAS  300
TNLNQFFKLY EKALESRNEK EVKADYDTMN TSPVLKTPSP MERQASELYT RKLFMRFQEE  360
LVGTLTFMAS KAEDDGEIIT YQVAKFGEDH KAYYVKFNVL EMKASCTCQM FEFSGLLCRH  420
VLAVFRVTNV LTLPSHYILK RWTRNAKSSV ILEERSNDVY TNYLESHTVR FNTLRHETFK  480
FVDEAAKAIE TYNVAIDALQ EAAKRVALAA KNEGKPTMVN GRIRGSSAGD ANRASTVSGN  540
HCAISSQPLS EDDMDKKIRE LTNEQDFASR KCEVYRANLL SVLKDIEDHK LQLSIKVQNI  600
KISMKDSL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486554.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P5Y4970.0A0A2P5Y497_GOSBA; Uncharacterized protein
STRINGXP_006486554.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]