PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8468_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YC

Protein Properties

Length: 298aa MW: 33487.3 Da PI: 6.2343

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8468_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.8e-56	82	186	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv Neem_8468_f_2 82 QLQMFWSNQmqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 177 89****988889****************************************************************************** PP NF-YC 94 divprdelk 102 di+prdelk Neem_8468_f_2 178 DIIPRDELK 186 ****875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.41E-34	61	176	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-37	95	168	IPR009072	Histone-fold
Pfam	PF00808	2.8E-21	104	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDQPDQTQQQ QQQQPVMGVI AGTGQMTYPP YQTAPMVASG TPAVPVHSPT QPPSTFSNSA 60 HQLAFQQAQH FHHQQQQQQQ QQLQMFWSNQ MQEIEQTSDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPVV GSPADMPLYY VPGDELKEEG LGVTKATIPV VGSPADMPLY 240 YVPSQHPVPP TGMIMGKPVD QAALYPAQQP RPPMAFMPWP QTQPQQQQHR RKELPPLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-55	90	182	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422281.1	1e-132	nuclear transcription factor Y subunit C-2
Refseq	XP_006493757.1	1e-132	nuclear transcription factor Y subunit C-2
Refseq	XP_006493758.1	1e-132	nuclear transcription factor Y subunit C-2
Refseq	XP_024036481.1	1e-132	nuclear transcription factor Y subunit C-2
Refseq	XP_024949451.1	1e-132	nuclear transcription factor Y subunit C-2
TrEMBL	A0A2H5NRC0	1e-132	A0A2H5NRC0_CITUN; Uncharacterized protein
STRING	XP_006493757.1	1e-132	(Citrus sinensis)
STRING	XP_006422281.1	1e-132	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-80	nuclear factor Y, subunit C2