PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_845_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 834aa    MW: 92103 Da    PI: 6.2977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_845_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.8e-24127228199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  Neem_845_f_1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKN 219
                   99*****************************8544444..48************************************************..88999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  Neem_845_f_1 220 QLLLGIRRA 228
                   99****997 PP
2Auxin_resp89.18e-30253320167
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvs 67 
                   aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++gv 
  Neem_845_f_1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGVG 320
                   79*********************************9789***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-22126227No hitNo description
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24127229IPR003340B3 DNA binding domain
PfamPF023623.2E-22127228IPR003340B3 DNA binding domain
PfamPF065078.7E-26253321IPR010525Auxin response factor
SuperFamilySSF542772.16E-7693776No hitNo description
PfamPF023095.6E-7698789IPR033389AUX/IAA domain
PROSITE profilePS5174524.555701785IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MRLSSAGFSP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PPTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP  360
PGLPAFHGIK DDDMGLNSQL MWLRGDGDRG MQSLNFQGLG VTPWMQPRLD ASMLGLQSDM  420
YQAMAAAALR DMRTIDPPKP NATSLLQFQQ PQNLPSRTSS ALMQPQMLQQ SHPQQTFLQG  480
VQENQQQSQT QFASVSQSQS PPLQAISSLC QQQSFSDSNG NTMTTPVVSP LHSLLGSFTQ  540
DESSHLLNLP RSNPLIPAPT WPSKRAAVEP LFSSGAPQCV LPPVEQLGPP HTNLSQNSIS  600
LPPFPGRECS IDQEGSADPQ SHLLFGVNIE PSSLLMQNEM SSLGGVGSNC DSTTIPYASN  660
YMSTAGTDFS VNPAITPSNC IDESGFLQSP ENVGQINPPN RTFVKVYKSG SFGRSLDISK  720
FSSYHELRSE LARMFGLEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWPE FVNSVWCIKI  780
LSPPEVQQMG KRGIELLNSV PIQRLSNSSC DDYANRQDSR NLSTGITSVG SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1461133941388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468258.10.0auxin response factor 6 isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A067G9R00.0A0A067G9R0_CITSI; Auxin response factor
STRINGXP_006468258.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]