PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8447_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 333aa MW: 37815.9 Da PI: 8.1419

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8447_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.6	4.7e-12	65	89	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWtp+LH rFv+ave+LGG++ Neem_8447_f_3 65 PRLRWTPDLHLRFVHAVEKLGGQDM 89 8*********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-11	61	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDGSGRTEGS KTSPSNQIQQ ESESEENDEH ESNKPKNGGS SSNSTVEENE QKKPSVRPYV 60 RSKMPRLRWT PDLHLRFVHA VEKLGGQDMM ADHRHLVESG DRNIYNLSQL PMLQGYNCQS 120 HSSSFRYGDA SWSAAREYLM RSSCVSRSLI DETRPRLYGK VSQKLFDSNN SNWPTNCSFR 180 MGNSSNGANS IWKMPELKEE LLSSCMRHPW QPQSRLRPTE LNPVTQMQEQ MISSSRSTVP 240 LDSNTATNLQ ECRNSLKRKG LDCKLDLDLS LKLTTSSNEE RRRGLEDNEV VDSELSLSLY 300 SPSSSNKHSR LKEGQDRHSK ENARRASTLD LTI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429461.1	1e-121	putative Myb family transcription factor At1g14600
Refseq	XP_006481085.1	1e-121	putative Myb family transcription factor At1g14600
TrEMBL	A0A2H5MXL0	1e-120	A0A2H5MXL0_CITUN; Uncharacterized protein
TrEMBL	V4SZQ4	1e-120	V4SZQ4_9ROSI; Uncharacterized protein
STRING	XP_006481085.1	1e-121	(Citrus sinensis)
STRING	XP_006429461.1	1e-121	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-32	G2-like family protein